WormBase Tree Display for Gene: WBGene00021580
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WBGene00021580 | SMap | S_parent | Sequence | Y46C8AL | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | clec-174 | Person_evidence | WBPerson2531 | |||
Sequence_name | Y46C8AL.2 | ||||||
Molecular_name | Y46C8AL.2 | ||||||
Y46C8AL.2.1 | |||||||
CE40157 | |||||||
Other_name (4) | |||||||
Public_name | clec-174 | ||||||
DB_info | Database | AceView | gene | 4E700 | |||
WormQTL | gene | WBGene00021580 | |||||
WormFlux | gene | WBGene00021580 | |||||
NDB | locus_tag | CELE_Y46C8AL.2 | |||||
Panther | gene | CAEEL|WormBase=WBGene00021580|UniProtKB=Q9N3W8 | |||||
family | PTHR23062 | ||||||
NCBI | gene | 189943 | |||||
RefSeq | protein | NM_068040.4 | |||||
TREEFAM | TREEFAM_ID | TF317818 | |||||
TrEMBL | UniProtAcc | Q9N3W8 | |||||
UniProt_GCRP | UniProtAcc | Q9N3W8 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clec | ||||||
Allele (43) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00094060 | ||||||
Ortholog | WBGene00023668 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||
WBGene00025257 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
WBGene00035982 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
WBGene00035983 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
WBGene00035984 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
WBGene00040177 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
WBGene00042755 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
WBGene00035636 | Caenorhabditis briggsae | From_analysis | OMA | ||||
WBGene00157026 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||
WBGene00146363 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||
WBGene00056613 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00065175 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00067104 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00067106 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
CBOVI.g11167 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||
CSP21.g9529 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||
CSP31.g19741 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||
CSP32.g15733 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||
CSP38.g4142 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||
Cang_2012_03_13_00447.g10960 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||
chrIV_pilon.g10072 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (44) | |||||||
Structured_description | Automated_description | Involved in defense response to Gram-negative bacterium. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y46C8AL.2 | |||||
Corresponding_CDS_history | Y46C8AL.2:wp154 | ||||||
Y46C8AL.2:wp156 | |||||||
Corresponding_transcript | Y46C8AL.2.1 | ||||||
Other_sequence | Tcir_isotig09580 | ||||||
Experimental_info | RNAi_result | WBRNAi00092238 | Inferred_automatically | RNAi_primary | |||
WBRNAi00020641 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1027586 | ||||||
Expr1160117 | |||||||
Drives_construct | WBCnstr00024497 | ||||||
Construct_product | WBCnstr00024497 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (256) | |||||||
Interaction | WBInteraction000544080 | ||||||
WBInteraction000571164 | |||||||
Map_info | Map | IV | Position | -1.501 | Error | 0.01326 | |
Positive | Positive_clone | Y46C8AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031686 | ||||||
WBPaper00039120 | |||||||
WBPaper00055435 | |||||||
WBPaper00065681 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |