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WormBase Tree Display for Gene: WBGene00021533

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Name Class

WBGene00021533SMapS_parentSequenceY42G9A
IdentityVersion1
NameSequence_nameY42G9A.3
Molecular_nameY42G9A.3a
Y42G9A.3a.1
CE21870
Y42G9A.3b
CE33945
Y42G9A.3b.1
Other_nameCELE_Y42G9A.3Accession_evidenceNDBBX284603
Public_nameY42G9A.3
DB_infoDatabaseAceViewgene3H237
WormQTLgeneWBGene00021533
WormFluxgeneWBGene00021533
NDBlocus_tagCELE_Y42G9A.3
PanthergeneCAEEL|WormBase=WBGene00021533|UniProtKB=Q9N4Z5
familyPTHR45752
NCBIgene175865
RefSeqproteinNM_001027693.9
NM_001027694.7
TREEFAMTREEFAM_IDTF351911
TrEMBLUniProtAccQ86DD0
Q9N4Z5
UniProt_GCRPUniProtAccQ9N4Z5
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (24)
RNASeq_FPKM (74)
GO_annotation00083242
OrthologWBGene00039975Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00055394Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00120914Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00195115Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g4081Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4004Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g19421Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g11346Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16689Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g3254Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15713Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17331Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19680Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g11249Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-Y42G9A.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18582Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00387.g10551Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08844Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010802Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00443Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18092Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30147800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7862Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00281337Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00266275Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0052687Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050309-29Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-090312-76Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:26968Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2443542Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1307440Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00002632Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004929Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009647Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015779Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022759Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in signal transduction. Is an ortholog of human LRRC58 (leucine rich repeat containing 58).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY42G9A.3a
Y42G9A.3b
Corresponding_transcriptY42G9A.3a.1
Y42G9A.3b.1
Other_sequence (53)
Associated_featureWBsf645244
WBsf654966
WBsf659029
WBsf225053
WBsf225054
WBsf225055
Experimental_infoRNAi_resultWBRNAi00006876Inferred_automaticallyRNAi_primary
WBRNAi00073363Inferred_automaticallyRNAi_primary
WBRNAi00056437Inferred_automaticallyRNAi_primary
WBRNAi00056435Inferred_automaticallyRNAi_primary
WBRNAi00000316Inferred_automaticallyRNAi_primary
WBRNAi00007076Inferred_automaticallyRNAi_primary
WBRNAi00056436Inferred_automaticallyRNAi_primary
WBRNAi00020515Inferred_automaticallyRNAi_primary
WBRNAi00037022Inferred_automaticallyRNAi_primary
Expr_patternChronogram236
Chronogram888
Expr6965
Expr1010736
Expr1039414
Expr1159915
Expr2007465
Expr2025702
Drives_constructWBCnstr00003759
WBCnstr00024515
Construct_productWBCnstr00024515
Microarray_results (25)
Expression_cluster (191)
Map_infoPositivePositive_cloneY42G9AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-1.41356
ReferenceWBPaper00033118
WBPaper00038491
WBPaper00041771
WBPaper00055090
WBPaper00065331
MethodGene