WormBase Tree Display for Gene: WBGene00021476

WBGene00021476 SMap: S_parent: Sequence: Y39G10AR
  Identity: Version: 2
    Name: CGC_name: nsun-4 Person_evidence: WBPerson8352
      Sequence_name: Y39G10AR.21
      Molecular_name: Y39G10AR.21a
        Y39G10AR.21a.1
        CE28981
        Y39G10AR.21b
        CE49666
        Y39G10AR.21c
        CE49707
        Y39G10AR.21b.1
        Y39G10AR.21c.1
      Other_name: CELE_Y39G10AR.21 Accession_evidence: NDB BX284601
      Public_name: nsun-4
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Feb 2015 13:16:53 WBPerson2970 Name_change: CGC_name: nsun-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nsun
    Allele (64)
    Strain: WBStrain00055506
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP1040
    Ortholog: WBGene00026651 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057211 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00152378 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00193680 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00181469 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00107925 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00226754 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g5669 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7255 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7719 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g13459 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g565 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8059 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18622 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2327 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19767 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00010.g815 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_I.g1303 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold598.g5341 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01420.g20809 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_23106 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000783 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09160 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g2141 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10222420 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g315 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247224 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261334 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292126 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0283525 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-041212-77 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:31802 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2146565 Mus musculus From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      RGD:1559652 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00021686 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: Y39G10AR.21 is orthologous to human NSUN4, a putative S-adenosyl-L-methionine-dependent methyl-transferase. Curator_confirmed: WBPerson324
            WBPerson1823
            WBPerson567
          Date_last_updated: 30 May 2012 00:00:00
      Automated_description: Enables rRNA (cytosine-C5-)-methyltransferase activity and tRNA (cytosine-5-)-methyltransferase activity. Predicted to be involved in rRNA methylation and tRNA methylation. Predicted to be located in mitochondrion. Is an ortholog of human NSUN4 (NOP2/Sun RNA methyltransferase 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info (4)
  Experimental_info: RNAi_result: WBRNAi00056274 Inferred_automatically: RNAi_primary
      WBRNAi00004599 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021465
      Expr1039387
      Expr1159756
      Expr2014504
      Expr2032743
    Drives_construct: WBCnstr00024538
    Construct_product: WBCnstr00024538
    Microarray_results (20)
    Expression_cluster (89)
    SAGE_tag: SAGE:acactccact Strand: Sense
        Unambiguously_mapped
      SAGE:acactccactgggagcc Strand: Sense
        Unambiguously_mapped
      SAGE:ggggtactgc Strand: Antisense
      SAGE:agatttcaaa Strand: Sense
        Unambiguously_mapped
      SAGE:gaaacgatagaggcctg Strand: Antisense
      SAGE:gaaacgatag Strand: Antisense
      SAGE:ggggtactgcataaata Strand: Antisense
      SAGE:cttaaccttt Strand: Antisense
    Interaction (62)
  Map_info: Positive: Positive_clone: Y39G10AR Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I -9.42428
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00060731
    WBPaper00060738
  Method: Gene