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WormBase Tree Display for Gene: WBGene00021369

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Name Class

WBGene00021369SMapS_parentSequenceY37E11AR
IdentityVersion2
NameCGC_namesiah-1Person_evidenceWBPerson3411
Sequence_nameY37E11AR.2
Molecular_nameY37E11AR.2
Y37E11AR.2.1
CE21549
Other_nameY37E11AR.bCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y37E11AR.dCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y37E11AR.2Accession_evidenceNDBBX284604
Public_namesiah-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
202 Feb 2007 10:20:45WBPerson2970Name_changeCGC_namesiah-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsiah
Allele (55)
StrainWBStrain00003082
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00059148Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00074681Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00030107Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00143656Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WBGene00127461Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WBGene00193454Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00178359Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WBGene00160283Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00226664Brugia malayiFrom_analysisWormBase-Compara
CSP21.g113Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP31.g5384Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP39.g27849Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Csp11.Scaffold71.g438Caenorhabditis tropicalisFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02734Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g23214Panagrellus redivivusFrom_analysisWormBase-Compara
chrIV_pilon.g10031Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00217606Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00241383Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267736Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291677Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0003410Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-010319-31Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030922-1Danio rerioFrom_analysisInparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:10857Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:10858Homo sapiensFrom_analysisInparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:108064Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:108063Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:108062Mus musculusFrom_analysisInparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:620778Rattus norvegicusFrom_analysisInparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:620449Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionAutomated_descriptionPredicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Involved in programmed cell death involved in cell development. Predicted to be located in cytoplasm. Expressed in AIYL; AIYR; and tail. Is an ortholog of human SIAH1 (siah E3 ubiquitin protein ligase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY37E11AR.2
Corresponding_transcriptY37E11AR.2.1
Other_sequence (54)
Associated_featureWBsf996045
Experimental_infoRNAi_resultWBRNAi00055909Inferred_automaticallyRNAi_primary
WBRNAi00082220Inferred_automaticallyRNAi_primary
WBRNAi00075839Inferred_automaticallyRNAi_primary
WBRNAi00036802Inferred_automaticallyRNAi_primary
WBRNAi00020226Inferred_automaticallyRNAi_primary
WBRNAi00082227Inferred_automaticallyRNAi_primary
Expr_patternChronogram27
Chronogram1880
Expr6933
Expr6934
Expr10090
Expr1025211
Expr1039332
Expr1159430
Expr2015813
Expr2034046
Drives_constructWBCnstr00003296
WBCnstr00004571
WBCnstr00015062
WBCnstr00024574
Construct_productWBCnstr00024574
Microarray_results (17)
Expression_cluster (167)
Interaction (90)
Map_infoMapIVPosition-2.42817Error0.025563
PositivePositive_cloneY37E11ARInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00006488
WBPaper00037327
WBPaper00038491
WBPaper00038821
WBPaper00040433
WBPaper00042635
WBPaper00055090
WBPaper00056902
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene