WormBase Tree Display for Gene: WBGene00021021
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WBGene00021021 | SMap | S_parent | Sequence | W04B5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | mrpl-30 | Person_evidence | WBPerson261 | |||||
Sequence_name | W04B5.4 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_W04B5.4 | Accession_evidence | NDB | BX284603 | |||||
Public_name | mrpl-30 | ||||||||
DB_info | Database | AceView | gene | 3D496 | |||||
WormQTL | gene | WBGene00021021 | |||||||
WormFlux | gene | WBGene00021021 | |||||||
NDB | locus_tag | CELE_W04B5.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021021|UniProtKB=Q9UA63 | |||||||
family | PTHR15892 | ||||||||
NCBI | gene | 175359 | |||||||
RefSeq | protein | NM_065149.7 | |||||||
TREEFAM | TREEFAM_ID | TF314611 | |||||||
TrEMBL | UniProtAcc | Q9UA63 | |||||||
UniProt_GCRP | UniProtAcc | Q9UA63 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 10 Jun 2011 16:50:10 | WBPerson2970 | Name_change | CGC_name | mrpl-30 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | mrpl | ||||||||
Allele (207) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00100643 | ||||||||
00100644 | |||||||||
00125509 | |||||||||
00125510 | |||||||||
00125511 | |||||||||
Contained_in_operon | CEOP3076 | ||||||||
Ortholog | WBGene00035817 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00160956 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00147620 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00135407 | Caenorhabditis japonica | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WBGene00072424 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
WBGene00090219 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||||
CSP26.g17555 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g18660 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g22400 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g24300 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g5798 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g20803 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP40.g3570 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00420.g10620 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-mrpl-30 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
chrIII_pilon.g7098 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
FB:FBgn0029718 | Drosophila melanogaster | From_analysis | Hieranoid | ||||||
Inparanoid | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
ZFIN:ZDB-GENE-050522-240 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
HGNC:14036 | Homo sapiens | From_analysis | OrthoFinder | ||||||
Panther | |||||||||
PhylomeDB | |||||||||
MGI:1333820 | Mus musculus | From_analysis | OrthoFinder | ||||||
Panther | |||||||||
RGD:1308196 | Rattus norvegicus | From_analysis | OrthoFinder | ||||||
Panther | |||||||||
Structured_description | Concise_description | W04B5.4 encodes a putative mitochondrial ribosomal protein L30 thatinhibits DHC-1 in vivo; W04B5.4 is orthologous to human MRPL3;W04B5.4(RNAi) suppresses the lethality of conditional dhc-1 mutations,as well as the spindle length and cytokinesis defects of dhc-1(or195), indicating that W04B5.4 negatively regulates dynein; W04B5.4 is requiredfor embryonic and larval development in mass RNAi assays. | Paper_evidence | WBPaper00005654 | |||||
WBPaper00006395 | |||||||||
WBPaper00025054 | |||||||||
WBPaper00030897 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 26 Aug 2007 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion. Predicted to be part of large ribosomal subunit. Is an ortholog of human MRPL30 (mitochondrial ribosomal protein L30). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | W04B5.4 | |||||||
Corresponding_transcript | W04B5.4.1 | ||||||||
Other_sequence (25) | |||||||||
Associated_feature | WBsf991515 | ||||||||
WBsf1014404 | |||||||||
WBsf226273 | |||||||||
WBsf226274 | |||||||||
Experimental_info | RNAi_result | WBRNAi00054755 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007054 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026479 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068742 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007169 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036264 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068804 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009250 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054754 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109882 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1028481 | ||||||||
Expr1039163 | |||||||||
Expr1158292 | |||||||||
Expr2013712 | |||||||||
Expr2031947 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (82) | |||||||||
Interaction (29) | |||||||||
Map_info | Map | III | Position | -14.6073 | Error | 0.019558 | |||
Positive | Positive_clone | W04B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |