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WormBase Tree Display for Gene: WBGene00020871

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Name Class

WBGene00020871SMapS_parentSequenceT28A11
IdentityVersion1
NameSequence_nameT28A11.4
Molecular_nameT28A11.4
T28A11.4.1
CE14287
Other_nameCELE_T28A11.4Accession_evidenceNDBBX284605
Public_nameT28A11.4
DB_infoDatabaseAceViewgene5D747
WormQTLgeneWBGene00020871
WormFluxgeneWBGene00020871
NDBlocus_tagCELE_T28A11.4
PanthergeneCAEEL|WormBase=WBGene00020871|UniProtKB=P91520
familyPTHR35182
NCBIgene189011
RefSeqproteinNM_071502.3
TREEFAMTREEFAM_IDTF320479
TrEMBLUniProtAccP91520
UniProt_GCRPUniProtAccP91520
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (27)
RNASeq_FPKM (74)
OrthologWBGene00033927Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00192104Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00033926Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CBOVI.g12558Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g6937Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12169Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9292Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g12138Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g15937Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g15941Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g23920Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g24100Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6975Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17208Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g21446Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10021Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8365Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_II.g5304Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g5305Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold485.g1937Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02164.g25189Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02164.g25190Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02224.g25509Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03512.g30435Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_006451Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrV_pilon.g13693Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00126117Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00135529Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00137063Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00054294Caenorhabditis remaneiFrom_analysisWormBase-Compara
ParalogWBGene00007497Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00010216Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00015281Caenorhabditis elegansFrom_analysisPanther
WBGene00015476Caenorhabditis elegansFrom_analysisPanther
WBGene00017127Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017128Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022230Caenorhabditis elegansFrom_analysisPanther
WBGene00044516Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in dopaminergic neurons; muscle cell; and ventral nerve cord based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on tiling array; RNA-seq; and microarray studies. Is affected by four chemicals including copper sulfate; multi-walled carbon nanotube; and Rifampin based on microarray and RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST28A11.4
Corresponding_transcriptT28A11.4.1
Experimental_infoRNAi_result (2)
Expr_patternExpr1025871
Expr1157912
Drives_constructWBCnstr00024822
Construct_productWBCnstr00024822
Microarray_results (15)
Expression_cluster (66)
InteractionWBInteraction000213068
WBInteraction000267016
Map_infoPositivePositive_cloneT28A11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV-12.398
ReferenceWBPaper00064623
MethodGene