WormBase Tree Display for Gene: WBGene00020453
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WBGene00020453 | SMap | S_parent | Sequence | CHROMOSOME_III | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (125) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00065179 | Caenorhabditis remanei | From_analysis | OMA | |||
Inparanoid_8 | |||||||
WBGene00083155 | Caenorhabditis remanei | From_analysis | OMA | ||||
Inparanoid_8 | |||||||
WBGene00083134 | Caenorhabditis remanei | From_analysis | OMA | ||||
Inparanoid_8 | |||||||
WBGene00042834 | Caenorhabditis briggsae | From_analysis | OMA | ||||
WBGene00142261 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00088344 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||
WBGene00122765 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||
WBGene00083213 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083157 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00065190 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083192 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00065189 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083166 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083129 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00065183 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
CSP28.g1658 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||
Csp5_scaffold_01469.g21102 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||
Csp5_scaffold_01608.g22044 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||
FL83_04257 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||
FL83_06434 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||
GCK72_021039 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
GCK72_021180 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
GCK72_021457 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
WBGene00061924 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
WBGene00063323 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
Paralog (222) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in AFD; ASER; and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including rotenone; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS (2) | ||||||
Corresponding_CDS_history | T12B5.6:wp151 | ||||||
T12B5.6a:wp253 | |||||||
Corresponding_transcript | T12B5.6a | ||||||
T12B5.6b.1 | |||||||
T12B5.6c.1 | |||||||
Other_sequence | Oden_isotig22831 | ||||||
Associated_feature | WBsf991189 | ||||||
WBsf1014150 | |||||||
Experimental_info | RNAi_result | WBRNAi00035506 | Inferred_automatically | RNAi_primary | |||
WBRNAi00018634 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053190 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006619 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1156782 | ||||||
Expr2011557 | |||||||
Expr2029795 | |||||||
Drives_construct | WBCnstr00025127 | ||||||
Construct_product | WBCnstr00025127 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (127) | |||||||
Interaction (27) | |||||||
Map_info | Map | III | Position | -25.0866 | Error | 0.003123 | |
Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |