WormBase Tree Display for Gene: WBGene00019713
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| WBGene00019713 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name (5) | |||||||||
| DB_info | Database | AceView | gene | 1G136 | |||||
| WormQTL | gene | WBGene00019713 | |||||||
| WormFlux | gene | WBGene00019713 | |||||||
| NDB | locus_tag | CELE_M01E11.4 | |||||||
| NCBI | gene | 172210 | |||||||
| RefSeq | protein | NM_059228.7 | |||||||
| NM_059229.7 | |||||||||
| NM_001026404.8 | |||||||||
| TrEMBL | UniProtAcc | G4SL51 | |||||||
| H2L044 | |||||||||
| G5EER0 | |||||||||
| UniProt_GCRP | UniProtAcc | G4SL51 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 31 Aug 2004 16:22:44 | WBPerson1971 | Event | Acquires_merge | WBGene00004137 | ||||
| Acquires_merge | WBGene00004137 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP1974 | ||||||||
| Ortholog | WBGene00035266 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00191713 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00060380 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00145639 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||||
| WBGene00161522 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||||
| WBGene00225307 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
| CBOVI.g9889 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP21.g397 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g6446 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g14747 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g2954 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g7550 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g17572 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g6463 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g5098 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g11842 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00744.g13823 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cnig_chr_I.g823 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold617.g6029 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold617.g6030 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_02104.g24866 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_06394 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_001286 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| OTIPU.nOt.2.0.1.g06809 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
| Sp34_10300200 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrI_pilon.g949 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00207548 | Caenorhabditis japonica | From_analysis | WormBase-Compara | ||||||
| WBGene00073128 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| WBGene00236877 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
| WBGene00112493 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00113968 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | pqn-52 encodes, by alternative splicing, three proteins withglutamine/asparagine (Q/N)-rich ('prion') domains; at least one of theseisoforms bound KLC-2 in a mass yeast two-hybrid screen; PQN-52 proteinsare predicted to be secreted, and have no obvious homologs outside ofthe nematodes (e.g., Brugia malayi 14952.m01392). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00006332 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 22 Feb 2007 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including CAN; cholinergic neurons; coelomocyte; germ line; and head mesodermal cell based on proteomic; tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including skn-1; let-7; and gld-1 based on proteomic; RNA-seq; and microarray studies. Is affected by eighteen chemicals including aldicarb; rotenone; and Psoralens based on microarray; RNA-seq; and proteomic studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M01E11.4a | |||||||
| M01E11.4b | |||||||||
| M01E11.4c | |||||||||
| Corresponding_transcript | M01E11.4a.1 | ||||||||
| M01E11.4b.1 | |||||||||
| M01E11.4c.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf655269 | ||||||||
| WBsf655270 | |||||||||
| WBsf219447 | |||||||||
| WBsf219448 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050716 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034332 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003991 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050755 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001269 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004007 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026229 | ||||||||
| Expr1038518 | |||||||||
| Expr1154452 | |||||||||
| Expr2015057 | |||||||||
| Expr2033292 | |||||||||
| Drives_construct | WBCnstr00025653 | ||||||||
| Construct_product | WBCnstr00025653 | ||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (175) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | I | Position | 0.151105 | Error | 0.015506 | |||
| Positive | Positive_clone | M01E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | pqn-52 previously corresponded to a separate Gene object (WBGene00004137) but the structure of this gene was merged into that of WBGene00019713 | Curator_confirmed | WBPerson1971 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
