WormBase Tree Display for Gene: WBGene00019546

WBGene00019546 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 2
    Name: CGC_name: glct-6 Person_evidence: WBPerson1983
      Sequence_name: W07G9.2
      Molecular_name: W07G9.2a
        W07G9.2a.1
        CE39798
        W07G9.2b
        CE50307
        W07G9.2c
        CE50304
        W07G9.2b.1
        W07G9.2c.1
      Other_name: K09B3.2
        W07G9.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_W07G9.2 Accession_evidence: NDB BX284604
      Public_name: glct-6
    DB_info: Database: AceView gene 4E555
        WormFlux gene WBGene00019546
        NDB locus_tag CELE_W07G9.2
        Panther gene CAEEL|WormBase=W07G9.2b|UniProtKB=A0A0K3AUF6
          family PTHR10896
        NCBI gene 4363062
        RefSeq protein NM_001380161.2
            NM_001313036.3
            NM_001313035.3
        KEGG KEGG_id 2.4.1.135
        NemaPath KEGG_id 2.4.1.135
        TrEMBL UniProtAcc A0A0K3ARJ9
            A0A0K3AUF6
            G4SN66
        UniProt_GCRP UniProtAcc A0A0K3AUF6
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 17 Sep 2008 13:35:32 WBPerson2970 Name_change: CGC_name: glct-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: glct
    Allele (147)
    RNASeq_FPKM (74)
    GO_annotation (16)
    Ortholog: WBGene00030104 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
      WBGene00091512 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00164125 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00145824 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00080434 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00084575 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00122738 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00030102 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00223184 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g3690 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g7551 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g7552 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3242 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21758 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g21759 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7449 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g786 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3403 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g27853 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g14082 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00254.g7961 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00648.g13131 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_01133.g15774 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_06542.g20326 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g15158 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15710 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00329.g9527 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_20457 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_015057 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01024 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10902 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10740 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40079810 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10036 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247093 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00262697 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00262728 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00266811 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00297188 Trichuris muris From_analysis: WormBase-Compara
      WBGene00302307 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0032135 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      FB:FBgn0036144 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-040801-191 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-050419-21 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-131101-1 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            Panther
            PhylomeDB
      HGNC:921 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            Panther
      HGNC:922 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            Panther
      MGI:1924148 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
            Panther
            PhylomeDB
      RGD:70880 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            Panther
            PhylomeDB
    Paralog: WBGene00008160 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00008293 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00008479 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00011650 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00011781 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00005026 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity. Predicted to be involved in carbohydrate metabolic process and chondroitin sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Human ortholog(s) of this gene implicated in Barrett's esophagus and schizophrenia. Is an ortholog of human B3GAT1 (beta-1,3-glucuronyltransferase 1) and B3GAT2 (beta-1,3-glucuronyltransferase 2). Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9206 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:922)
      DOID:5419 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:922)
  Molecular_info: Corresponding_CDS: W07G9.2a
      W07G9.2b
      W07G9.2c
    Corresponding_CDS_history: K09B3.2:wp154
    Corresponding_transcript: W07G9.2a.1
      W07G9.2b.1
      W07G9.2c.1
    Other_sequence: Acan_isotig04721
      ACC38686_1
      EY460287.1
      BU665944.1
      AS13682
      CJC00145_1
      ACC32967_1
      Acan_isotig04720
      NAC00723_1
      EY461809.1
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00103571 Inferred_automatically: RNAi_primary
      WBRNAi00078601 Inferred_automatically: RNAi_primary
      WBRNAi00034186 Inferred_automatically: RNAi_primary
      WBRNAi00019710 Inferred_automatically: RNAi_primary
      WBRNAi00016876 Inferred_automatically: RNAi_primary
      WBRNAi00050378 Inferred_automatically: RNAi_primary
      WBRNAi00115913 Inferred_automatically: RNAi_primary
      WBRNAi00078668 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016151
      Expr1038448
      Expr1158502
      Expr2012085
      Expr2030321
    Drives_construct: WBCnstr00025774
    Construct_product: WBCnstr00025774
    Microarray_results (20)
    Expression_cluster (145)
    Interaction: WBInteraction000274526
      WBInteraction000379723
      WBInteraction000389797
  Map_info: Map: IV Position: -2.25846 Error: 0.014484
    Positive: Positive_clone: W07G9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00065080
    WBPaper00065331
  Remark: K09B3.2 renamed W07G9.2 Curator_confirmed: WBPerson1867
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene