WormBase Tree Display for Gene: WBGene00019220

WBGene00019220 SMap: S_parent: Sequence: H20J04
  Identity: Version: 3
    Name: CGC_name: pfd-2 Person_evidence: WBPerson3663
            WBPerson2136
      Sequence_name: H20J04.5
      Molecular_name: H20J04.5
        H20J04.5.1
        CE23815
      Other_name: tag-355
        CELE_H20J04.5 Accession_evidence: NDB BX284602
      Public_name: pfd-2
    DB_info: Database: AceView gene 2E617
        WormQTL gene WBGene00019220
        WormFlux gene WBGene00019220
        NDB locus_tag CELE_H20J04.5
        Panther gene CAEEL|WormBase=WBGene00019220|UniProtKB=Q9N5M2
          family PTHR13303
        NCBI gene 173768
        RefSeq protein NM_062363.8
        SwissProt UniProtAcc Q9N5M2
        TREEFAM TREEFAM_ID TF313252
        UniProt_GCRP UniProtAcc Q9N5M2
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 21 Jun 2005 09:45:25 WBPerson2970 Name_change: CGC_name: tag-355
        3 02 Aug 2006 11:39:27 WBPerson2970 Name_change: CGC_name: pfd-2
                Other_name: tag-355
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pfd
    Allele (26)
    Strain: WBStrain00055411
    RNASeq_FPKM (74)
    GO_annotation: 00095519
      00095520
      00095521
      00095522
      00095523
      00095524
      00124114
      00124115
      00124116
    Contained_in_operon: CEOP2124
    Ortholog: WBGene00026479 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            WormBase-Compara
      WBGene00154969 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00149990 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00210987 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00224925 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g12164 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21561 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g391 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12739 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27392 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15684 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g17656 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g16159 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g2453 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00231.g7483 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-pfd-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      FL83_10937 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_004613 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08641 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20236000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4224 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00213067 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00238034 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304737 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00289495 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000729 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0010741 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-060519-27 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:8867 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1276111 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1591406 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Structured_description: Concise_description: pfd-2 encodes a putative prefoldin subunit 2, orthologous to human PFDN2, that is required for normal microtubule growth; pfd-2(RNAi) animals have sterile progeny, and pfd-2(RNAi) embryos show a reduced microtubule growth rate; in mass RNAi assays, PFD-2 is required for normal pronuclear migration, embryonic and larval viability, body shape, and locomotion. Paper_evidence: WBPaper00004651
            WBPaper00005654
            WBPaper00006060
            WBPaper00006395
            WBPaper00024497
            WBPaper00025054
            WBPaper00031309
            WBPaper00031362
            WBPaper00031363
          Curator_confirmed: WBPerson567
          Date_last_updated: 14 Jan 2008 00:00:00
      Automated_description: Predicted to enable protein folding chaperone. Predicted to be involved in protein folding. Located in endoplasmic reticulum; sarcomere; and striated muscle dense body. Is an ortholog of human PFDN2 (prefoldin subunit 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: H20J04.5
    Corresponding_transcript: H20J04.5.1
    Other_sequence (26)
    Associated_feature: WBsf987575
      WBsf987576
      WBsf987577
      WBsf1012073
      WBsf1012074
      WBsf221111
      WBsf221112
  Experimental_info: RNAi_result (21)
    Expr_pattern: Expr9429
      Expr1018343
      Expr1038301
      Expr1153172
      Expr2014842
      Expr2033077
    Construct_product: WBCnstr00013994
      WBCnstr00016241
    Microarray_results (18)
    Expression_cluster (102)
    SAGE_tag: SAGE:ttttcatacgttttttc Strand: Sense
        Unambiguously_mapped
      SAGE:ttttcatacg Strand: Sense
        Unambiguously_mapped
      SAGE:aaaaagcagt Strand: Antisense
      SAGE:aaaaagcagtaggaaat Strand: Antisense
    Interaction (90)
  Map_info (4)
  Reference: WBPaper00031309
    WBPaper00031320
    WBPaper00038444
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene