WormBase Tree Display for Gene: WBGene00019203

WBGene00019203 SMap: S_parent: Sequence: H14N18
  Identity: Version: 2
    Name: CGC_name: ttr-47
      Sequence_name: H14N18.3
      Molecular_name: H14N18.3
        H14N18.3.1
        CE17975
      Other_name: CELE_H14N18.3 Accession_evidence: NDB BX284605
      Public_name: ttr-47
    DB_info: Database: AceView gene 5J403
        WormQTL gene WBGene00019203
        WormFlux gene WBGene00019203
        NDB locus_tag CELE_H14N18.3
        Panther gene CAEEL|WormBase=WBGene00019203|UniProtKB=O61977
          family PTHR21700
        NCBI gene 179270
        RefSeq protein NM_001380717.2
        TREEFAM TREEFAM_ID TF315773
        TrEMBL UniProtAcc O61977
        UniProt_GCRP UniProtAcc O61977
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Sep 2007 11:48:01 WBPerson2970 Name_change: CGC_name: ttr-47
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    Allele (16)
    RNASeq_FPKM (74)
    GO_annotation: 00036765
      00036766
      00124094
    Ortholog: WBGene00038402 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00068025 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00152860 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00133447 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00231041 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1938 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1432 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5601 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4627 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18155 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g17471 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g18142 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4113 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g23734 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g21451 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00498.g11569 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ttr-47 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15383 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_05441.g34997 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09693 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017289 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g9327 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50230810 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15112 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00118267 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00266958 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog (62)
    Structured_description: Automated_description: Predicted to be located in cell surface and extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: H14N18.3
    Corresponding_transcript: H14N18.3.1
    Other_sequence (17)
    Associated_feature (6)
  Experimental_info: RNAi_result: WBRNAi00016272 Inferred_automatically: RNAi_primary
      WBRNAi00078376 Inferred_automatically: RNAi_primary
      WBRNAi00103418 Inferred_automatically: RNAi_primary
      WBRNAi00033716 Inferred_automatically: RNAi_primary
      WBRNAi00049409 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022957
      Expr1038291
      Expr1153144
      Expr2017614
      Expr2035752
    Drives_construct: WBCnstr00025993
    Construct_product: WBCnstr00025993
    Microarray_results (18)
    Expression_cluster (175)
    Interaction (157)
  Map_info: Map: V Position: 1.79465 Error: 0.029413
    Positive: Positive_clone: H14N18 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene