WormBase Tree Display for Gene: WBGene00019003

WBGene00019003 SMap: S_parent: Sequence: F57B10
  Identity: Version: 2
    Name: CGC_name: tmed-3 Person_evidence: WBPerson451
      Sequence_name: F57B10.5
      Molecular_name: F57B10.5
        F57B10.5.1
        CE11306
      Other_name: CELE_F57B10.5 Accession_evidence: NDB BX284601
      Public_name: tmed-3
    DB_info: Database: AceView gene 1H139
        WormQTL gene WBGene00019003
        WormFlux gene WBGene00019003
        NDB locus_tag CELE_F57B10.5
        Panther gene CAEEL|WormBase=WBGene00019003|UniProtKB=O44738
          family PTHR22811
        NCBI gene 172372
        RefSeq protein NM_059491.5
        TrEMBL UniProtAcc O44738
        UniProt_GCRP UniProtAcc O44738
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 09 Jan 2019 16:22:24 WBPerson1983 Name_change: CGC_name: tmed-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tmed
    Allele: WBVar00644561
      WBVar00644562
      WBVar00336499
      WBVar00336500
      WBVar00336501
      WBVar00336502
      WBVar01499786
      WBVar01499054
      WBVar01500216
      WBVar01498959
    Strain: WBStrain00051895
    RNASeq_FPKM (74)
    GO_annotation: 00033245
      00033246
      00033247
      00033248
      00033249
      00033250
      00033251
      00033252
      00033253
    Contained_in_operon: CEOP1336
    Ortholog: WBGene00033573 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00066727 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00164554 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00157064 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00206559 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00130704 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g9171 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2147 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP28.g6494 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8261 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7725 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3569 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g608 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7600 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cang_2012_03_13_00001.g99 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-F57B10.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold583.g4710 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00615.g13581 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17711 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002900 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_10332100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1192 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00209930 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00237555 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00281714 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263508 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000002176 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
      FB:FBgn0030341 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-8335 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2570 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:28889 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:24253 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:33945 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913361 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1913926 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:727954 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1303327 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog (7)
    Structured_description: Automated_description: Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in intracellular membrane-bounded organelle. Is an ortholog of human TMED7 (transmembrane p24 trafficking protein 7) and TMED7-TICAM2 (TMED7-TICAM2 readthrough). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F57B10.5
    Corresponding_transcript: F57B10.5.1
    Other_sequence (80)
    Associated_feature: WBsf656417
      WBsf217853
      WBsf217854
      WBsf217855
  Experimental_info: RNAi_result: WBRNAi00076497 Inferred_automatically: RNAi_primary
      WBRNAi00116582 Inferred_automatically: RNAi_primary
      WBRNAi00003840 Inferred_automatically: RNAi_primary
      WBRNAi00048821 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016251
      Expr1038204
      Expr1152577
      Expr2004338
      Expr2022563
    Drives_construct: WBCnstr00026133
    Construct_product: WBCnstr00026133
    Microarray_results (20)
    Expression_cluster (87)
    Interaction (29)
  Map_info: Positive: Positive_clone: F57B10 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 1.21315
  Reference: WBPaper00031384
    WBPaper00038491
    WBPaper00055090
    WBPaper00064339
    WBPaper00065655
  Method: Gene