WormBase Tree Display for Gene: WBGene00018954

WBGene00018954 SMap: S_parent: Sequence: F56C9
  Identity: Version: 2
    Name: CGC_name: lab-2 Person_evidence: WBPerson26504
      Sequence_name: F56C9.11
      Molecular_name: F56C9.11
        F56C9.11.1
        CE31004
      Other_name (2)
      Public_name: lab-2
    DB_info: Database: AceView gene 3I416
        WormQTL gene WBGene00018954
        WormFlux gene WBGene00018954
        NDB locus_tag CELE_F56C9.11
        NCBI gene 176039
        RefSeq protein NM_171189.8
        TREEFAM TREEFAM_ID TF327237
        TrEMBL UniProtAcc Q8WQE8
        UniProt_GCRP UniProtAcc Q8WQE8
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 02 Mar 2020 15:16:17 WBPerson1983 Name_change: CGC_name: lab-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lab
    Allele (82)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP3425
    Ortholog: WBGene00023973 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00081931 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00126314 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CSP26.g7310 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13771 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16340 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g2164 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g863 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1347 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-F56C9.11 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15117 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_05211.g34592 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_20190 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_008696 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_30035200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8140 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in MSpaaaaa; germ line; rectal epithelial cell; rectum; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including eat-2; sir-2.1; and npr-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including rotenone; stavudine; and Zidovudine based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F56C9.11
    Corresponding_transcript: F56C9.11.1
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00005878 Inferred_automatically: RNAi_primary
      WBRNAi00068162 Inferred_automatically: RNAi_primary
      WBRNAi00015806 Inferred_automatically: RNAi_primary
      WBRNAi00048669 Inferred_automatically: RNAi_primary
      WBRNAi00048670 Inferred_automatically: RNAi_primary
      WBRNAi00067546 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013100
      Expr1038177
      Expr1152433
      Expr2004285
      Expr2022509
    Drives_construct: WBCnstr00026166
    Construct_product: WBCnstr00026166
    Microarray_results (17)
    Expression_cluster (97)
    Interaction: WBInteraction000007000
      WBInteraction000007616
      WBInteraction000556148
  Map_info: Map: III Position: -0.752615
    Positive: Positive_clone: F56C9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00066214
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene