WormBase Tree Display for Gene: WBGene00018613
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| WBGene00018613 | SMap | S_parent | Sequence | F48E8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | skpt-1 | Person_evidence | WBPerson322 | |||||
| Sequence_name | F48E8.7 | ||||||||
| Molecular_name | F48E8.7a | ||||||||
| F48E8.7a.1 | |||||||||
| CE28404 | |||||||||
| F48E8.7b | |||||||||
| CE01959 | |||||||||
| F48E8.7b.1 | |||||||||
| Other_name | CELE_F48E8.7 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | skpt-1 | ||||||||
| DB_info | Database | AceView | gene | 3G536 | |||||
| WormQTL | gene | WBGene00018613 | |||||||
| WormFlux | gene | WBGene00018613 | |||||||
| NDB | locus_tag | CELE_F48E8.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018613|UniProtKB=Q09397 | |||||||
| family | PTHR16134 | ||||||||
| NCBI | gene | 175749 | |||||||
| RefSeq | protein | NM_171865.7 | |||||||
| NM_171121.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF352582 | |||||||
| TrEMBL | UniProtAcc | Q8MQ34 | |||||||
| Q09397 | |||||||||
| UniProt_GCRP | UniProtAcc | Q09397 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 02 Feb 2006 09:28:57 | WBPerson2970 | Name_change | CGC_name | skpt-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skpt | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00031667 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00053688 | ||||||||
| 00053689 | |||||||||
| Ortholog | WBGene00055684 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00027702 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00139938 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00131294 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| CBOVI.g5820 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP21.g10245 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g1088 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g9584 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g15181 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g11879 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g15924 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g11565 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g7734 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g12319 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_01076.g15597 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cni-skpt-1 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold628.g7462 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_01099.g18377 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_13537 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_010539 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| OTIPU.nOt.2.0.1.g10089 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
| Sp34_30113800 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrIII_pilon.g7711 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00209691 | Caenorhabditis japonica | From_analysis | WormBase-Compara | ||||||
| SGD:S000004344 | Saccharomyces cerevisiae | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| FB:FBgn0037236 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| ZFIN:ZDB-GENE-030219-158 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| HGNC:10901 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| MGI:1351663 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| RGD:1562456 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
| Hieranoid | |||||||||
| Inparanoid | |||||||||
| OMA | |||||||||
| OrthoFinder | |||||||||
| OrthoInspector | |||||||||
| Panther | |||||||||
| Paralog (22) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains leucine-rich repeats. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in breast cancer; carcinoma (multiple); and uterine disease (multiple). Is an ortholog of human SKP2 (S-phase kinase associated protein 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050866 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10901) | ||||
| DOID:8991 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10901) | ||||||
| DOID:5409 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10901) | ||||||
| DOID:2671 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10901) | ||||||
| DOID:0080365 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10901) | ||||||
| DOID:10286 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10901) | ||||||
| DOID:4450 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10901) | ||||||
| DOID:10283 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10901) | ||||||
| DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10901) | ||||||
| Molecular_info (4) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047756 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032491 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005292 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015255 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023194 | ||||||||
| Expr1038013 | |||||||||
| Expr1151588 | |||||||||
| Expr2015837 | |||||||||
| Expr2034070 | |||||||||
| Drives_construct | WBCnstr00026383 | ||||||||
| Construct_product | WBCnstr00026383 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (182) | |||||||||
| Interaction (256) | |||||||||
| Map_info | Map | III | Position | -1.69036 | Error | 0.012144 | |||
| Positive | Positive_clone | F48E8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| WBPaper00028040 | |||||||||
| WBPaper00028868 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
