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WormBase Tree Display for Gene: WBGene00017326

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Name Class

WBGene00017326SMapS_parentSequenceF10C1
IdentityVersion2
NameCGC_namedmd-5Person_evidenceWBPerson1375
WBPerson1997
Sequence_nameF10C1.5
Molecular_nameF10C1.5
F10C1.5.1
CE29753
Other_nameCELE_F10C1.5Accession_evidenceNDBBX284602
Public_namedmd-5
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:58WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
218 Jul 2005 13:34:00WBPerson2970Name_changeCGC_namedmd-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdmd
Allele (25)
StrainWBStrain00031994
WBStrain00051973
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00057286Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00025541Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00164669Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00128857Caenorhabditis japonicaFrom_analysisOMA
WBGene00164181Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00208684Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00058567Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00223518Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g7083Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15139Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5503Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP32.g13879Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17941Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19489Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g7440Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7058Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00060.g3021Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-dmd-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00079.g3595Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04407Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006117Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_011657Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10281Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g24183Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20116000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4603Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00066563Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00247409Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00112359Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00261419Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291357Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0039683Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
ZFIN:ZDB-GENE-050511-1Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
SonicParanoid
HGNC:13913Homo sapiensFrom_analysisEnsEMBL-Compara
Panther
HGNC:13908Homo sapiensFrom_analysisOrthoInspector
Panther
MGI:1927125Mus musculusFrom_analysisEnsEMBL-Compara
Panther
MGI:2653627Mus musculusFrom_analysisOrthoInspector
Panther
MGI:2653629Mus musculusFrom_analysisOrthoInspector
Panther
RGD:1309796Rattus norvegicusFrom_analysisOrthoInspector
Panther
RGD:1308173Rattus norvegicusFrom_analysisOrthoInspector
Panther
Paralog (9)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in male anatomical structure morphogenesis and negative regulation of synapse pruning. Predicted to be located in nucleus. Expressed in AVG; ventral nerve cord; and in male. Is an ortholog of human DMRTA2 (DMRT like family A2) and DMRTB1 (DMRT like family B with proline rich C-terminal 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF10C1.5
Corresponding_transcriptF10C1.5.1
Other_sequence (13)
Associated_featureWBsf650093
WBsf978816
WBsf987958
WBsf1012263
WBsf223096
Transcription_factorWBTranscriptionFactor000309
Experimental_infoRNAi_resultWBRNAi00071147Inferred_automaticallyRNAi_primary
WBRNAi00027266Inferred_automaticallyRNAi_primary
WBRNAi00025056Inferred_automaticallyRNAi_primary
WBRNAi00044219Inferred_automaticallyRNAi_primary
WBRNAi00030749Inferred_automaticallyRNAi_primary
WBRNAi00066782Inferred_automaticallyRNAi_primary
WBRNAi00013036Inferred_automaticallyRNAi_primary
Expr_patternExpr5714
Expr7499
Expr14521
Expr1013292
Expr1037450
Expr1148178
Expr1200011
Expr2010956
Expr2029195
Drives_constructWBCnstr00004010
WBCnstr00012644
WBCnstr00027385
WBCnstr00041072
Construct_productWBCnstr00027385
Microarray_results (19)
Expression_cluster (117)
Interaction (162)
Map_infoMapIIPosition-0.93372Error0.004814
PositivePositive_cloneF10C1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5321
4278
Pseudo_map_position
ReferenceWBPaper00027309
WBPaper00038491
WBPaper00047608
WBPaper00049547
WBPaper00052199
WBPaper00055090
WBPaper00061738
WBPaper00064718
WBPaper00064934
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene