WormBase Tree Display for Gene: WBGene00016989

WBGene00016989 SMap: S_parent: Sequence: CD4
  Identity (6)
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (15)
    RNASeq_FPKM (74)
    GO_annotation: 00032101
      00032102
      00032103
      00122493
    Contained_in_operon: CEOP5076
    Ortholog: WBGene00030961 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00058912 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00140573 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00216846 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00223253 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2119 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12210 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g8952 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g15814 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14185 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g18014 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g97 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2781 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g21817 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24620 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-CD4.3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold460.g1469 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00484.g11962 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12023 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017765 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g23708 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50197010 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14271 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243206 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304335 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263942 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286792 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0031357 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-041008-125 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:16653 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1289321 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1307576 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Paralog: WBGene00012556 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Predicted to be located in mitochondrial ribosome. Predicted to be part of ribonucleoprotein complex. Is an ortholog of human MRPL48 (mitochondrial ribosomal protein L48). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CD4.3
    Corresponding_transcript: CD4.3.1
      CD4.3.2
    Other_sequence (24)
    Associated_feature: WBsf661268
      WBsf231772
  Experimental_info: RNAi_result: WBRNAi00008565 Inferred_automatically: RNAi_primary
      WBRNAi00043303 Inferred_automatically: RNAi_primary
      WBRNAi00030293 Inferred_automatically: RNAi_primary
      WBRNAi00071531 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011292
      Expr1037295
      Expr1147283
      Expr2001992
      Expr2020216
    Drives_construct: WBCnstr00027653
    Construct_product: WBCnstr00027653
    Microarray_results (20)
    Expression_cluster (96)
    Interaction (31)
  Map_info: Positive: Positive_clone: CD4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V -1.36952
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00061547
  Method: Gene