WormBase Tree Display for Gene: WBGene00016837

WBGene00016837 SMap: S_parent: Sequence: C50F2
  Identity: Version: 2
    Name: CGC_name: syf-1
      Sequence_name: C50F2.3
      Molecular_name: C50F2.3
        C50F2.3.1
        CE08909
      Other_name: phi-4 Person_evidence: WBPerson2582
        CELE_C50F2.3 Accession_evidence: NDB BX284601
      Public_name: syf-1
    DB_info: Database: AceView gene 1E447
        WormQTL gene WBGene00016837
        WormFlux gene WBGene00016837
        NDB locus_tag CELE_C50F2.3
        Panther gene CAEEL|WormBase=WBGene00016837|UniProtKB=P91175
          family PTHR11246
        NCBI gene 171970
        RefSeq protein NM_058849.10
        TREEFAM TREEFAM_ID TF300866
        TrEMBL UniProtAcc P91175
        UniProt_GCRP UniProtAcc P91175
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 05 Apr 2017 11:17:23 WBPerson2970 Name_change: CGC_name: syf-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syf
    Allele (42)
    Strain: WBStrain00001905
      WBStrain00001495
      WBStrain00037603
    RNASeq_FPKM (74)
    GO_annotation: 00050193
      00050194
      00050195
      00050196
      00050197
      00050198
      00050199
      00050200
      00122366
      00122367
    Contained_in_operon: CEOP1128
    Ortholog: WBGene00032996 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00056474 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00148628 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00118206 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00152954 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00234196 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9004 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15901 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g12877 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6866 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1848 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5719 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13581 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21214 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g22586 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g8335 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16482 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_12074.g23554 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-C50F2.3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold627.g6769 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00437.g11363 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08158 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002158 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12296 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8668 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10165700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g599 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00119981 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00206672 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00239458 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00259012 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291157 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002824 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0033859 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-685 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:14089 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1914689 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621217 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00013343 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019762 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in generation of catalytic spliceosome for first transesterification step. Predicted to be part of Prp19 complex; U2-type catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Expressed in head and tail. Is an ortholog of human XAB2 (XPA binding protein 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C50F2.3
    Corresponding_transcript: C50F2.3.1
    Other_sequence (75)
    Associated_feature: WBsf643165
      WBsf643166
      WBsf656133
      WBsf217454
  Experimental_info: RNAi_result (39)
    Expr_pattern: Chronogram839
      Expr5557
      Expr5558
      Expr1026971
      Expr1037224
      Expr1146897
      Expr2017174
      Expr2035310
    Drives_construct: WBCnstr00002352
      WBCnstr00004320
      WBCnstr00027766
    Construct_product: WBCnstr00027766
    Microarray_results (19)
    Expression_cluster (111)
    Interaction (204)
  Map_info: Map: I Position: -1.95124
    Positive: Positive_clone: C50F2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00048493
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene