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WormBase Tree Display for Gene: WBGene00016614

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Name Class

WBGene00016614SMapS_parentSequenceC43H6
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classtrpp
Allele (59)
RNASeq_FPKM (74)
GO_annotation00081467
00081468
Contained_in_operonCEOPX028
OrthologWBGene00025234Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00058153Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00141077Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134323Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00222992Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3708Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g7175Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18899Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15692Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21917Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16650Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17445Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1321Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18894Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00034.g1948Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-trpp-12Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold582.g4607Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00382.g10476Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00986Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023908Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g11671Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0101600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18614Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242564Onchocerca volvulusFrom_analysisWormBase-Compara
FB:FBgn0037022Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-070112-1282Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:24284Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2445089Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1566054Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionAutomated_descriptionPredicted to be located in Golgi apparatus. Predicted to be part of TRAPP complex. Is an ortholog of human TRAPPC12 (trafficking protein particle complex subunit 12).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC43H6.1
Corresponding_CDS_historyC43H6.1:wp133
C43H6.1a:wp264
C43H6.1b:wp264
Corresponding_transcriptC43H6.1.1
Other_sequenceCRC05689_1
CJC04198_1
NB06680
Associated_featureWBsf647858
Experimental_infoRNAi_resultWBRNAi00011895Inferred_automaticallyRNAi_primary
WBRNAi00011894Inferred_automaticallyRNAi_primary
WBRNAi00029772Inferred_automaticallyRNAi_primary
WBRNAi00011901Inferred_automaticallyRNAi_primary
WBRNAi00023086Inferred_automaticallyRNAi_primary
WBRNAi00042400Inferred_automaticallyRNAi_primary
WBRNAi00042399Inferred_automaticallyRNAi_primary
Expr_patternExpr1025144
Expr1037137
Expr1146391
Expr2017508
Expr2035647
Drives_constructWBCnstr00027936
Construct_productWBCnstr00027936
Microarray_results (30)
Expression_cluster (151)
InteractionWBInteraction000251396
WBInteraction000431223
Map_infoMapXPosition-15.5671
PositivePositive_cloneC43H6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
MethodGene