WormBase Tree Display for Gene: WBGene00016415

WBGene00016415 SMap: S_parent: Sequence: C34F11
  Identity: Version: 2
    Name: CGC_name: ampd-1 Person_evidence: WBPerson10610
      Sequence_name: C34F11.3
      Molecular_name (12)
      Other_name: CELE_C34F11.3 Accession_evidence: NDB BX284602
      Public_name: ampd-1
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 27 Jun 2014 15:53:55 WBPerson2970 Name_change: CGC_name: ampd-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ampd
    Allele (78)
    Strain: WBStrain00051109
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00025418 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057411 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00124878 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00114531 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00085844 Caenorhabditis remanei From_analysis: OMA
            TreeFam
      WBGene00191553 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00194013 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222852 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6305 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2744 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11812 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14660 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20098 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22379 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g22380 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4415 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3555 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4537 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7201 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00190.g6623 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ampd-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15952 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00197.g6817 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06016 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005974 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04223 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11271 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20097700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4445 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00240443 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00258087 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00262218 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00263637 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293913 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004498 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0052626 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-5929 Danio rerio From_analysis: OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-110407-2 Danio rerio From_analysis: OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-070713-5 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-091204-4 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:468 Homo sapiens From_analysis: OMA
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:469 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:470 Homo sapiens From_analysis: OrthoFinder
            Panther
            PhylomeDB
      MGI:1096344 Mus musculus From_analysis: OrthoFinder
            OrthoInspector
            Panther
      MGI:88016 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:88015 Mus musculus From_analysis: OMA
            OrthoFinder
            Panther
            PhylomeDB
      RGD:2109 Rattus norvegicus From_analysis: OMA
            OrthoFinder
            Panther
            PhylomeDB
      RGD:2111 Rattus norvegicus From_analysis: OrthoFinder
            OrthoInspector
            Panther
      RGD:2110 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable AMP deaminase activity. Predicted to be involved in AMP metabolic process and IMP biosynthetic process. Predicted to be located in cytosol. Human ortholog(s) of this gene implicated in several diseases, including congestive heart failure; hereditary spastic paraplegia 63; and pontocerebellar hypoplasia type 9. Is an ortholog of human AMPD2 (adenosine monophosphate deaminase 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:6000 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:468)
      DOID:0060278 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:469)
      DOID:0110814 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:469)
      DOID:3393 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:468)
  Molecular_info: Corresponding_CDS (4)
    Corresponding_CDS_history: C34F11.3a:wp88
      C34F11.3a:wp214
      C34F11.3b:wp88
      C34F11.3b:wp214
      C34F11.3c:wp214
    Corresponding_transcript: C34F11.3a.1
      C34F11.3b.1
      C34F11.3c.1
      C34F11.3d.1
    Other_sequence (78)
    Associated_feature: WBsf644169
      WBsf654864
      WBsf716685
      WBsf987815
      WBsf987816
      WBsf987817
      WBsf1012193
      WBsf1012194
      WBsf221244
  Experimental_info: RNAi_result: WBRNAi00041909 Inferred_automatically: RNAi_primary
      WBRNAi00076196 Inferred_automatically: RNAi_primary
      WBRNAi00041910 Inferred_automatically: RNAi_primary
      WBRNAi00011616 Inferred_automatically: RNAi_primary
      WBRNAi00024736 Inferred_automatically: RNAi_primary
      WBRNAi00027209 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram508
      Expr5422
      Expr5423
      Expr1011813
      Expr1037035
      Expr1145917
      Expr2009323
      Expr2027559
    Drives_construct: WBCnstr00003972
      WBCnstr00003973
      WBCnstr00028087
    Construct_product: WBCnstr00028087
    Microarray_results (39)
    Expression_cluster (202)
    Interaction (28)
  Map_info: Map: II Position: -1.9316
    Positive: Positive_clone: C34F11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00057506
    WBPaper00058130
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene