WormBase Tree Display for Gene: WBGene00015345
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| WBGene00015345 | SMap | S_parent | Sequence | C02F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C02F5.2 | |||||||
| Molecular_name | C02F5.2 | ||||||||
| C02F5.2.1 | |||||||||
| CE44142 | |||||||||
| Other_name | CELE_C02F5.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | C02F5.2 | ||||||||
| DB_info | Database | AceView | gene | 3J339 | |||||
| WormQTL | gene | WBGene00015345 | |||||||
| WormFlux | gene | WBGene00015345 | |||||||
| NDB | locus_tag | CELE_C02F5.2 | |||||||
| NCBI | gene | 182121 | |||||||
| RefSeq | protein | NM_066409.3 | |||||||
| SwissProt | UniProtAcc | P34279 | |||||||
| TREEFAM | TREEFAM_ID | TF320058 | |||||||
| UniProt_GCRP | UniProtAcc | P34279 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00042810 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00054756 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00152213 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00211615 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| CSP21.g3281 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g21818 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g16473 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP31.g5129 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g1767 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g16907 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g4491 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g8233 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00583.g12475 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cni-C02F5.2 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold78.g477 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| GCK72_009789 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| Sp34_30232800 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrIII_pilon.g8344 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00015351 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in germ line based on RNA-seq studies. Is affected by several genes including daf-2; skn-1; and eat-2 based on tiling array; microarray; and RNA-seq studies. Is affected by fourteen chemicals including methylmercuric chloride; manganese chloride; and multi-walled carbon nanotube based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Uncharacterised protein family C02F5.10 and Family of unknown function (DUF5356). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C02F5.2 | |||||||
| Corresponding_CDS_history | C02F5.2:wp206 | ||||||||
| Corresponding_transcript | C02F5.2.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00006732 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028358 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039451 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010011 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019530 | ||||||||
| Expr1143562 | |||||||||
| Expr2000340 | |||||||||
| Expr2018564 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (95) | |||||||||
| Interaction | WBInteraction000210661 | ||||||||
| WBInteraction000236559 | |||||||||
| WBInteraction000258947 | |||||||||
| WBInteraction000326965 | |||||||||
| WBInteraction000345028 | |||||||||
| Map_info | Positive | Positive_clone | C02F5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -0.353234 | |||||||
| Method | Gene |
