WormBase Tree Display for Gene: WBGene00015099

WBGene00015099 SMap: S_parent: Sequence: B0280
  Identity: Version: 2
    Name: CGC_name: ggtb-1
      Sequence_name: B0280.1
      Molecular_name: B0280.1a
        B0280.1a.1
        CE24762
        B0280.1b
        CE00735
        B0280.1b.1
        B0280.1b.2
      Other_name: CELE_B0280.1 Accession_evidence: NDB BX284603
      Public_name: ggtb-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 08 Jan 2009 13:54:58 WBPerson2970 Name_change: CGC_name: ggtb-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ggtb
    Allele (40)
    Strain: WBStrain00001303
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog: WBGene00054699 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00036494 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00162320 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00121016 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00235033 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5554 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7265 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4640 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16445 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22764 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1276 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12415 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3218 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4556 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g4561 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16121 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-ggtb-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold36.g157 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00171.g6231 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12429 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009853 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04163 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12771 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30241110 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8085 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00218008 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00239725 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00116876 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00264692 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290990 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000006380 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0028970 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2116 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9796 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:99537 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:3530 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (2)
    Structured_description: Automated_description: Predicted to enable small GTPase binding activity and zinc ion binding activity. Predicted to contribute to Rab geranylgeranyltransferase activity. Involved in PERK-mediated unfolded protein response. Predicted to be part of Rab-protein geranylgeranyltransferase complex. Expressed in head; intestine; and tail. Is an ortholog of human RABGGTB (Rab geranylgeranyltransferase subunit beta). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0280.1a
      B0280.1b
    Corresponding_CDS_history: B0280.1b:wp151
    Corresponding_transcript: B0280.1a.1
      B0280.1b.1
      B0280.1b.2
    Other_sequence (54)
    Associated_feature: WBsf645319
      WBsf225199
  Experimental_info: RNAi_result (25)
    Expr_pattern: Chronogram1088
      Expr90
      Expr5033
      Expr1021670
      Expr1036451
      Expr1143036
      Expr2012036
      Expr2030272
    Drives_construct: WBCnstr00002196
      WBCnstr00029088
    Construct_product: WBCnstr00029088
    Microarray_results (32)
    Expression_cluster (117)
    Interaction (20)
  Map_info: Map: III Position: -0.787736 Error: 0.0003
    Positive: Positive_clone: B0280 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00018228
    WBPaper00030935
    WBPaper00038491
    WBPaper00055090
    WBPaper00059604
    WBPaper00064071
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene