WormBase Tree Display for Gene: WBGene00013758
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WBGene00013758 | SMap | S_parent | Sequence | Y113G7B | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-114 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y113G7B.7 | ||||||||
Molecular_name | Y113G7B.7 | ||||||||
Y113G7B.7.1 | |||||||||
CE23289 | |||||||||
Other_name | CELE_Y113G7B.7 | Accession_evidence | NDB | BX284605 | |||||
Public_name | fbxa-114 | ||||||||
DB_info | Database | AceView | gene | 5U671 | |||||
WormQTL | gene | WBGene00013758 | |||||||
WormFlux | gene | WBGene00013758 | |||||||
NDB | locus_tag | CELE_Y113G7B.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00013758|UniProtKB=Q9U2X6 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 190972 | |||||||
RefSeq | protein | NM_075496.5 | |||||||
TREEFAM | TREEFAM_ID | TF322006 | |||||||
TrEMBL | UniProtAcc | Q9U2X6 | |||||||
UniProt_GCRP | UniProtAcc | Q9U2X6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-114 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (108) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP5504 | ||||||||
Ortholog | WBGene00023954 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
WBGene00033413 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00035626 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00037960 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00041155 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
OMA | |||||||||
WBGene00041890 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00027441 | Caenorhabditis briggsae | From_analysis | OMA | ||||||
WBGene00034195 | Caenorhabditis briggsae | From_analysis | OMA | ||||||
WBGene00065822 | Caenorhabditis remanei | From_analysis | OMA | ||||||
WBGene00065820 | Caenorhabditis remanei | From_analysis | OMA | ||||||
WBGene00142989 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
WBGene00162596 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
WBGene00145284 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
WBGene00163948 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
WBGene00160936 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
WBGene00122765 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
GCK72_019758 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g18043 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00063730 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Paralog (225) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including germ line; germline precursor cell; head mesodermal cell; neurons; and pm8 based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including cyc-1; nuo-6; and atfs-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including manganese chloride; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: FTH domain; F-box domain; F-box A protein FB224; F-box-like domain superfamily; and Domain of unknown function DUF38/FTH, Caenorhabditis species. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y113G7B.7 | |||||||
Corresponding_transcript | Y113G7B.7.1 | ||||||||
Experimental_info | RNAi_result (5) | ||||||||
Expr_pattern | Expr1024237 | ||||||||
Expr1158924 | |||||||||
Expr2011460 | |||||||||
Expr2029698 | |||||||||
Microarray_results (15) | |||||||||
Expression_cluster (104) | |||||||||
Interaction (33) | |||||||||
Map_info | Map | V | Position | 24.9294 | Error | 0.003417 | |||
Positive | Positive_clone | Y113G7B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
WBPaper00034662 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |