WormBase Tree Display for Gene: WBGene00013197

WBGene00013197 SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 2
    Name: CGC_name: ttm-5 Paper_evidence: WBPaper00038231
          Person_evidence: WBPerson26
      Sequence_name: Y54E5A.1
      Molecular_name: Y54E5A.1
        Y54E5A.1.1
        CE28791
        Y54E5A.1.2
      Other_name: Y105E8B.o Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y54E5A.1 Accession_evidence: NDB BX284601
      Public_name: ttm-5
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 26 Apr 2011 13:31:47 WBPerson2970 Name_change: CGC_name: ttm-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttm
    Allele (64)
    Strain: WBStrain00002797
      WBStrain00032378
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog: WBGene00060858 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030495 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00105823 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00194062 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00124465 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g10149 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11303 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5839 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g7101 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8267 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g13387 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5872 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9258 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7817 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g26256 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4688 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00002.g215 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ttm-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19035 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00465.g11730 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09166 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001487 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10113 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15442 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10005500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g2941 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00260001 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293800 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0001941 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-030131-5283 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-080228-1 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:13709 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:20113 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1097711 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1917309 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:3588271 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:70917 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1564463 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1305023 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1593185 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
    Paralog: WBGene00017996 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable sphingolipid delta-4 desaturase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 18. Is an ortholog of human DEGS1 (delta 4-desaturase, sphingolipid 1) and DEGS2 (delta 4-desaturase, sphingolipid 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0070399 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:13709)
  Molecular_info: Corresponding_CDS: Y54E5A.1
    Corresponding_CDS_history: Y54E5A.1:wp58
    Corresponding_transcript: Y54E5A.1.1
      Y54E5A.1.2
    Other_sequence (38)
    Associated_feature: WBsf986209
      WBsf220637
  Experimental_info: RNAi_result: WBRNAi00036493 Inferred_automatically: RNAi_primary
      WBRNAi00088631 Inferred_automatically: RNAi_primary
      WBRNAi00004475 Inferred_automatically: RNAi_primary
      WBRNAi00004740 Inferred_automatically: RNAi_primary
      WBRNAi00116027 Inferred_automatically: RNAi_primary
      WBRNAi00057380 Inferred_automatically: RNAi_primary
      WBRNAi00088738 Inferred_automatically: RNAi_primary
      WBRNAi00116537 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1613
      Expr7042
      Expr1018037
      Expr1035865
      Expr1160815
      Expr2017573
      Expr2035712
    Drives_construct: WBCnstr00003324
    Microarray_results (22)
    Expression_cluster (193)
    Interaction: WBInteraction000032307
      WBInteraction000032358
      WBInteraction000032359
      WBInteraction000339846
      WBInteraction000513239
      WBInteraction000513240
      WBInteraction000513241
      WBInteraction000541099
      WBInteraction000541100
  Map_info: Map: I Position: 26.2109 Error: 0.061874
    Positive: Positive_clone: Y54E5A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026800
    WBPaper00038491
    WBPaper00042257
    WBPaper00046057
    WBPaper00055090
    WBPaper00062863
    WBPaper00063285
    WBPaper00064339
    WBPaper00064934
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene