WormBase Tree Display for Gene: WBGene00012382

WBGene00012382 SMap: S_parent: Sequence: Y5F2A
  Identity: Version: 2
    Name: CGC_name: ttr-16
      Sequence_name: Y5F2A.1
      Molecular_name: Y5F2A.1
        Y5F2A.1.1
        CE19022
      Other_name: CELE_Y5F2A.1 Accession_evidence: NDB BX284604
      Public_name: ttr-16
    DB_info: Database (10)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 20 Sep 2007 11:48:01 WBPerson2970 Name_change: CGC_name: ttr-16
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    Allele (12)
    RNASeq_FPKM (74)
    GO_annotation: 00048647
      00048648
      00119535
    Ortholog: WBGene00028344 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00062518 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00074194 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00159342 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00090904 Pristionchus pacificus From_analysis: OMA
      WBGene00131773 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00106183 Pristionchus pacificus From_analysis: OMA
      CBOVI.g8379 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3294 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16046 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2201 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23766 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2160 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17899 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6708 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g6711 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g23688 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17297 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_05958.g19959 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ttr-16 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8018 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00007.g470 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12832 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014045 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_40312500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11754 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (62)
    Structured_description: Automated_description: Predicted to be located in cell surface and extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y5F2A.1
    Corresponding_transcript: Y5F2A.1.1
    Other_sequence (66)
    Associated_feature: WBsf652180
      WBsf652181
      WBsf668288
      WBsf230810
      WBsf230811
      WBsf230812
  Experimental_info: RNAi_result: WBRNAi00021182 Inferred_automatically: RNAi_primary
      WBRNAi00057789 Inferred_automatically: RNAi_primary
      WBRNAi00037642 Inferred_automatically: RNAi_primary
      WBRNAi00001663 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013713
      Expr1035485
      Expr1161219
      Expr2017580
      Expr2035720
    Microarray_results (18)
    Expression_cluster (175)
    Interaction (86)
  Map_info: Map: IV Position: 4.82258
    Positive: Positive_clone: Y5F2A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00033099
    WBPaper00063976
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene