WormBase Tree Display for Gene: WBGene00011835

WBGene00011835 SMap: S_parent: Sequence: T19B10
  Identity: Version: 2
    Name: CGC_name: pgap-1
      Sequence_name: T19B10.8
      Molecular_name: T19B10.8
        T19B10.8.1
        CE45494
      Other_name: CELE_T19B10.8 Accession_evidence: NDB BX284605
      Public_name: pgap-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 11 Dec 2018 16:50:34 WBPerson1983 Name_change: CGC_name: pgap-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pgap
    Allele (43)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Contained_in_operon: CEOP5280
    Ortholog: WBGene00041553 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00161541 Caenorhabditis brenneri From_analysis: OMA
      WBGene00071134 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00191257 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00270700 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00226099 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3138 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10828 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4728 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18269 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25519 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2304 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18103 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1696 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g3539 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cnig_chr_V.g19235 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold519.g2800 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00394.g10683 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_016671 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10264 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9465 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50316220 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15721 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00211948 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00214594 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00241153 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304661 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00259965 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00261072 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00261979 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000001869 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0029789 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-090313-216 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:25712 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2443342 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1303213 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable phosphatidylinositol deacylase activity. Predicted to be involved in GPI anchor metabolic process and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum. Is an ortholog of human PGAP1 (post-GPI attachment to proteins inositol deacylase 1). Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T19B10.8
    Corresponding_CDS_history: T19B10.8:wp220
    Corresponding_transcript: T19B10.8.1
    Other_sequence: CBC06477_1
      Oden_isotig25919
    Associated_feature: WBsf647242
      WBsf977289
      WBsf977290
      WBsf977291
      WBsf232484
  Experimental_info: RNAi_result: WBRNAi00007670 Inferred_automatically: RNAi_primary
      WBRNAi00053497 Inferred_automatically: RNAi_primary
      WBRNAi00111240 Inferred_automatically: RNAi_primary
      WBRNAi00000823 Inferred_automatically: RNAi_primary
      WBRNAi00035650 Inferred_automatically: RNAi_primary
      WBRNAi00018821 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017180
      Expr1035217
      Expr1157063
      Expr2006242
      Expr2024460
    Drives_construct: WBCnstr00030347
    Construct_product: WBCnstr00030347
    Microarray_results (20)
    Expression_cluster (144)
    Interaction (124)
  Map_info: Map: V Position: 3.00411
    Positive: Positive_clone: T19B10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene