WormBase Tree Display for Gene: WBGene00011743

WBGene00011743 SMap: S_parent: Sequence: T13F2
  Identity: Version: 1
    Name: Sequence_name: T13F2.2
      Molecular_name: T13F2.2
        T13F2.2.1
        CE13621
      Other_name: CELE_T13F2.2 Accession_evidence: NDB BX284604
      Public_name: T13F2.2
    DB_info: Database: AceView gene 4K562
        WormQTL gene WBGene00011743
        WormFlux gene WBGene00011743
        NDB locus_tag CELE_T13F2.2
        Panther gene CAEEL|WormBase=WBGene00011743|UniProtKB=Q94045
          family PTHR13215
        NCBI gene 188475
        RefSeq protein NM_069349.7
        SwissProt UniProtAcc Q94045
        TREEFAM TREEFAM_ID TF313859
        UniProt_GCRP UniProtAcc Q94045
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (11)
    RNASeq_FPKM (74)
    GO_annotation: 00086937
      00086938
      00086939
      00086940
      00086941
      00118979
      00118980
      00118981
      00118982
    Contained_in_operon: CEOP4624
    Ortholog: WBGene00026342 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00062670 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00152816 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00159755 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00180043 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226029 Brugia malayi From_analysis: WormBase-Compara
      CSP26.g5834 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g8837 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3182 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP40.g13019 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00328.g9273 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-T13F2.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold585.g4861 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00592.g13265 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_13754 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014433 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrIV_pilon.g11412 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00239142 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278749 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00295270 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296411 Trichuris muris From_analysis: WormBase-Compara
      WBGene00300177 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004642 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      FB:FBgn0015299 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040718-209 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-050522-151 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:19985 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:104811 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:621582 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Structured_description: Automated_description: Enables transcription coactivator activity. Involved in RNA polymerase II promoter clearance. Predicted to be located in nucleus. Is an ortholog of human SUB1 (SUB1 regulator of transcription). Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T13F2.2
    Corresponding_transcript: T13F2.2.1
    Other_sequence: CRC10439_1
      CR02943
      CBC12389_1
    Associated_feature: WBsf652084
      WBsf652085
      WBsf652086
      WBsf997480
      WBsf230622
  Experimental_info: RNAi_result: WBRNAi00053269 Inferred_automatically: RNAi_primary
      WBRNAi00018676 Inferred_automatically: RNAi_primary
      WBRNAi00008260 Inferred_automatically: RNAi_primary
      WBRNAi00035540 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023970
      Expr1035168
      Expr1156855
      Expr2006154
      Expr2024369
    Drives_construct: WBCnstr00030423
    Construct_product: WBCnstr00030423
    Microarray_results (18)
    Expression_cluster (104)
    Interaction (30)
  Map_info: Positive: Positive_clone: T13F2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 4.4188
  Reference: WBPaper00032961
    WBPaper00038491
    WBPaper00045860
    WBPaper00055090
    WBPaper00065308
  Method: Gene