WormBase Tree Display for Gene: WBGene00011292

WBGene00011292 SMap: S_parent: Sequence: R102
  Identity: Version: 2
    Name: CGC_name: allo-1
      Sequence_name: R102.5
      Molecular_name: R102.5a
        R102.5a.1
        CE35601
        R102.5b
        CE35602
        R102.5b.1
      Other_name: CELE_R102.5 Accession_evidence: NDB BX284604
      Public_name: allo-1
    DB_info: Database: AceView gene 4L460
        WormQTL gene WBGene00011292
        WormFlux gene WBGene00011292
        NDB locus_tag CELE_R102.5
        NCBI gene 177962
        RefSeq protein NM_069580.7
            NM_069579.6
        SwissProt UniProtAcc Q9U389
        TREEFAM TREEFAM_ID TF321834
        UniProt_GCRP UniProtAcc Q9U389
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 04 Jan 2018 11:02:49 WBPerson1983 Name_change: CGC_name: allo-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: allo
    Allele (34)
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP4392
    Ortholog: WBGene00037218 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00073889 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00059278 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00192342 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00194567 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00127091 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g8945 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g19205 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21643 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7330 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6493 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13327 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4544 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g15671 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6670 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00217.g7236 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-R102.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g17699 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00190.g6647 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14037 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014906 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_40093420 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11654 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enables protein homodimerization activity. Involved in autophagosome assembly and regulation of autophagy. Located in cytoplasm. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R102.5a
      R102.5b
    Corresponding_CDS_history: R102.5a:wp109
      R102.5b:wp109
    Corresponding_transcript (2)
    Other_sequence: CRC07284_1
      CJC06633_1
      CBC00833_1
      CR09968
      CJC03232_1
      CJC01093_1
    Associated_feature: WBsf652151
      WBsf652152
      WBsf981815
      WBsf997677
      WBsf1018127
      WBsf230766
      WBsf230767
  Experimental_info: RNAi_result: WBRNAi00113648 Inferred_automatically: RNAi_primary
      WBRNAi00051660 Inferred_automatically: RNAi_primary
      WBRNAi00061639 Inferred_automatically: RNAi_primary
      WBRNAi00109754 Inferred_automatically: RNAi_primary
      WBRNAi00109801 Inferred_automatically: RNAi_primary
      WBRNAi00061865 Inferred_automatically: RNAi_primary
      WBRNAi00017677 Inferred_automatically: RNAi_primary
      WBRNAi00109707 Inferred_automatically: RNAi_primary
      WBRNAi00034800 Inferred_automatically: RNAi_primary
      WBRNAi00109660 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9432
      Expr14451
      Expr1028712
      Expr1034964
      Expr1155333
      Expr2005535
      Expr2023754
    Drives_construct (2)
    Construct_product: WBCnstr00013997
      WBCnstr00030770
      WBCnstr00039382
    Antibody: WBAntibody00002801
    Microarray_results (27)
    Expression_cluster (191)
    Interaction (38)
  Map_info: Map: IV Position: 4.66475
    Positive: Positive_clone: R102 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00030887
    WBPaper00038444
    WBPaper00053507
    WBPaper00064006
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene