WormBase Tree Display for Gene: WBGene00011247

WBGene00011247 SMap: S_parent: Sequence: R11D1
  Identity: Version: 2
    Name: CGC_name: mrpl-49 Person_evidence: WBPerson261
      Sequence_name: R11D1.9
      Molecular_name: R11D1.9
        R11D1.9.1
        CE40109
      Other_name: CELE_R11D1.9 Accession_evidence: NDB BX284605
      Public_name: mrpl-49
    DB_info: Database: AceView gene 5N209
        WormQTL gene WBGene00011247
        WormFlux gene WBGene00011247
        NDB locus_tag CELE_R11D1.9
        Panther gene CAEEL|WormBase=WBGene00011247|UniProtKB=Q21939
          family PTHR13477
        NCBI gene 187809
        RefSeq protein NM_073778.6
        SwissProt UniProtAcc Q21939
        TREEFAM TREEFAM_ID TF317750
        UniProt_GCRP UniProtAcc Q21939
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrpl-49
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (17)
    RNASeq_FPKM (74)
    GO_annotation: 00073416
      00073417
      00073418
      00073419
      00073420
      00073421
      00073422
      00118504
      00118505
      00118506
    Contained_in_operon: CEOP5368
    Ortholog: WBGene00030332 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00052608 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00147502 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00140297 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00127891 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00225611 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g683 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5646 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4941 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5249 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18797 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1029 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1442 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4763 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8528 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18497 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00093.g4147 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-mrpl-49 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21495 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00439.g11386 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_13931 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14619 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g4389 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50177800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g16081 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243116 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00258568 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302865 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000667 Saccharomyces cerevisiae From_analysis: OrthoFinder
            Panther
      FB:FBgn0030433 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-060810-161 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      HGNC:1176 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:108180 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1309920 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is an ortholog of human MRPL49 (mitochondrial ribosomal protein L49). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R11D1.9
    Corresponding_CDS_history: R11D1.9:wp156
    Corresponding_transcript: R11D1.9.1
    Other_sequence (32)
    Associated_feature: WBsf647397
      WBsf1001635
      WBsf020883
      WBsf232689
  Experimental_info (7)
  Map_info: Map: V Position: 4.61626 Error: 0.000208
    Positive: Positive_clone: R11D1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00059356
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene