WormBase Tree Display for Gene: WBGene00011222
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| WBGene00011222 | SMap | S_parent | Sequence | R10H10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | R10H10.3 | |||||||
| Molecular_name | R10H10.3 | ||||||||
| R10H10.3.1 | |||||||||
| CE06294 | |||||||||
| Other_name | CELE_R10H10.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | R10H10.3 | ||||||||
| DB_info | Database | AceView | gene | 4L157 | |||||
| WormQTL | gene | WBGene00011222 | |||||||
| WormFlux | gene | WBGene00011222 | |||||||
| NDB | locus_tag | CELE_R10H10.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011222|UniProtKB=Q21916 | |||||||
| family | PTHR45645 | ||||||||
| NCBI | gene | 177930 | |||||||
| RefSeq | protein | NM_069517.5 | |||||||
| TREEFAM | TREEFAM_ID | TF316586 | |||||||
| TrEMBL | UniProtAcc | Q21916 | |||||||
| UniProt_GCRP | UniProtAcc | Q21916 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (55) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00059196 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00075001 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00030183 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00164393 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00134543 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| CBOVI.g7864 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP21.g17 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g8862 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g21748 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g7439 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g5376 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g795 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g17342 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g8750 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g15074 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00069.g3328 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cni-R10H10.3 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold417.g1122 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00358.g10065 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_18221 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_014990 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| OTIPU.nOt.2.0.1.g08077 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
| Pan_g7149 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
| Sp34_40078810 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| WBGene00102709 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00259063 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| Paralog (50) | |||||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell; intestine; pharyngeal muscle cell; and sensory neurons based on tiling array; RNA-seq; proteomic; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; proteomic; and RNA-seq studies. Is affected by eighteen chemicals including Mercuric Chloride; D-glucose; and bisphenol A based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domains: von Willebrand factor, type A; Uncharacterised conserved protein UCP027682, CUB, vWA; Spermadhesin, CUB domain superfamily; von Willebrand factor A-like domain superfamily; and CUB domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info (4) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00034835 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002285 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017729 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051740 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027385 | ||||||||
| Expr1155405 | |||||||||
| Expr2005566 | |||||||||
| Expr2023784 | |||||||||
| Drives_construct | WBCnstr00030833 | ||||||||
| Construct_product | WBCnstr00030833 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (212) | |||||||||
| Interaction (106) | |||||||||
| Map_info | Positive | Positive_clone | R10H10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 4.58047 | |||||||
| Reference | WBPaper00018359 | ||||||||
| WBPaper00058665 | |||||||||
| Method | Gene |
