WormBase Tree Display for Gene: WBGene00011217

WBGene00011217 SMap: S_parent: Sequence: R10E11
  Identity: Version: 1
    Name: Sequence_name: R10E11.5
      Molecular_name: R10E11.5a
        R10E11.5a.1
        CE39268
        R10E11.5b
        CE46330
        R10E11.5b.1
      Other_name: CELE_R10E11.5 Accession_evidence: NDB BX284603
      Public_name: R10E11.5
    DB_info: Database: AceView gene 3K874
        WormQTL gene WBGene00011217
        WormFlux gene WBGene00011217
        NDB locus_tag CELE_R10E11.5
        NCBI gene 187778
        RefSeq protein NM_001268103.3
            NM_001268102.3
        SwissProt UniProtAcc P34549
        TREEFAM TREEFAM_ID TF342679
        TrEMBL UniProtAcc G3MTX4
        UniProt_GCRP UniProtAcc P34549
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (43)
    RNASeq_FPKM (74)
    Ortholog: WBGene00031486 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00055022 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00160119 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00125437 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00225591 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4109 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g15440 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9679 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16869 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25393 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6345 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1436 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1235 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g3450 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_01160.g15847 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-R10E11.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g9437 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00071.g3324 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18388 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009517 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_30200900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8706 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245065 Onchocerca volvulus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in GLR; head mesodermal cell; lumbar ganglion; neurons; and spermathecal-uterine valve cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including cyc-1; nuo-6; and atfs-1 based on microarray; tiling array; and RNA-seq studies. Is affected by ten chemicals including rotenone; Zidovudine; and rifampin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: R10E11.5a
      R10E11.5b
    Corresponding_CDS_history: R10E11.5:wp57
      R10E11.5:wp151
    Corresponding_transcript: R10E11.5a.1
      R10E11.5b.1
    Associated_feature: WBsf666483
      WBsf993803
      WBsf993804
      WBsf1015673
      WBsf1015674
      WBsf227369
  Experimental_info: RNAi_result: WBRNAi00051697 Inferred_automatically: RNAi_primary
      WBRNAi00006368 Inferred_automatically: RNAi_primary
      WBRNAi00017701 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023759
      Expr1155370
      Expr2005546
      Expr2023765
    Drives_construct: WBCnstr00030838
    Construct_product: WBCnstr00030838
    Microarray_results (20)
    Expression_cluster (149)
    Interaction (16)
  Map_info: Positive: Positive_clone: R10E11 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III 1.06385
  Method: Gene