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WormBase Tree Display for Gene: WBGene00010993

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Name Class

WBGene00010993SMapS_parentSequenceR03E1
IdentityVersion2
NameCGC_namevha-20Person_evidenceWBPerson171
Sequence_nameR03E1.2
Molecular_nameR03E1.2
R03E1.2.1
CE18902
Other_nameCELE_R03E1.2Accession_evidenceNDBBX284606
Public_namevha-20
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
209 Jan 2015 16:33:20WBPerson2970Name_changeCGC_namevha-20
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvha
Allele (37)
StrainWBStrain00051438
RNASeq_FPKM (74)
GO_annotation (16)
Contained_in_operonCEOPX128
OrthologWBGene00056020Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00036285Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WBGene00146910Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127102Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00042086Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00225453Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3656Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14064Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6108Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13488Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20651Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g24613Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g730Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g18501Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19354Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14885Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00446.g10946Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_11765.g23415Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g7979Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g7981Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g7983Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7095Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9657Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00640.g13903Caenorhabditis sinicaFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01310Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4165Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0028200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20532Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239116Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00111223Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00293299Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0037671Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
ZFIN:ZDB-GENE-040426-1960Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:18305Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:1917745Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1561269Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00020500Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable signaling receptor activity. Involved in nematode larval development and regulation of intracellular pH. Located in apical plasma membrane. Expressed in amphid neurons. Human ortholog(s) of this gene implicated in X-linked parkinsonism-spasticity syndrome; congenital disorder of glycosylation type II; and syndromic X-linked intellectual disability Hedera type. Is an ortholog of human ATP6AP2 (ATPase H+ transporting accessory protein 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050571Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18305)
DOID:0112105Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18305)
DOID:0060806Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18305)
Molecular_infoCorresponding_CDSR03E1.2
Corresponding_transcriptR03E1.2.1
Other_sequence (54)
Associated_featureWBsf1007839
WBsf1007840
WBsf238202
Experimental_infoRNAi_resultWBRNAi00091183Inferred_automaticallyRNAi_primary
WBRNAi00091182Inferred_automaticallyRNAi_primary
WBRNAi00051179Inferred_automaticallyRNAi_primary
WBRNAi00026015Inferred_automaticallyRNAi_primary
WBRNAi00090872Inferred_automaticallyRNAi_primary
WBRNAi00009029Inferred_automaticallyRNAi_primary
WBRNAi00034558Inferred_automaticallyRNAi_primary
Expr_patternExpr12676
Expr12677
Expr1028269
Expr1034822
Expr1154886
Expr2017987
Expr2036123
Drives_constructWBCnstr00022597
WBCnstr00022598
WBCnstr00022599
WBCnstr00031010
Construct_productWBCnstr00022597
WBCnstr00022598
WBCnstr00022599
WBCnstr00031010
Microarray_results (19)
Expression_cluster (131)
Interaction (43)
Map_info (3)
ReferenceWBPaper00024639
WBPaper00038491
WBPaper00048272
WBPaper00049011
WBPaper00055090
WBPaper00058870
WBPaper00065140
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene