WormBase Tree Display for Gene: WBGene00010977

WBGene00010977 SMap: S_parent: Sequence: R02D5
  Identity: Version: 1
    Name: Sequence_name: R02D5.3
      Molecular_name: R02D5.3
        R02D5.3.1
        CE40234
      Other_name: CELE_R02D5.3 Accession_evidence: NDB BX284605
      Public_name: R02D5.3
    DB_info: Database: AceView gene 5O963
        WormQTL gene WBGene00010977
        WormFlux gene WBGene00010977
        NDB locus_tag CELE_R02D5.3
        Panther gene CAEEL|WormBase=WBGene00010977|UniProtKB=Q21635
          family PTHR33748
        NCBI gene 187521
        RefSeq protein NM_074192.6
        TREEFAM TREEFAM_ID TF320948
        TrEMBL UniProtAcc Q21635
        UniProt_GCRP UniProtAcc Q21635
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (22)
    RNASeq_FPKM (74)
    GO_annotation: 00072279
      00072280
      00118275
    Ortholog: WBGene00027239 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00064423 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00138871 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00126420 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00183671 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00225440 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g703 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g16327 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14370 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2703 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12018 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g12875 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6240 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18129 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10089 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g23771 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17867 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00037.g2096 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-R02D5.3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19843 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00719.g14772 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11964 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017495 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05147 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g6250 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50354600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g16543 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248889 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00258137 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00008496 Caenorhabditis elegans From_analysis: Panther
      WBGene00017299 Caenorhabditis elegans From_analysis: Panther
      WBGene00012439 Caenorhabditis elegans From_analysis: Panther
      WBGene00045418 Caenorhabditis elegans From_analysis: Panther
      WBGene00015622 Caenorhabditis elegans From_analysis: Panther
      WBGene00013195 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to be located in membrane. Predicted to be part of acetylcholine-gated channel complex. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R02D5.3
    Corresponding_CDS_history: R02D5.3:wp158
    Corresponding_transcript: R02D5.3.1
    Other_sequence: CJC01135_1
    Associated_feature: WBsf232933
  Experimental_info: RNAi_result: WBRNAi00017320 Inferred_automatically: RNAi_primary
      WBRNAi00051132 Inferred_automatically: RNAi_primary
      WBRNAi00034534 Inferred_automatically: RNAi_primary
      WBRNAi00078377 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011890
      Expr1154841
      Expr2005320
      Expr2023540
    Drives_construct: WBCnstr00031021
    Construct_product: WBCnstr00015411
      WBCnstr00031021
    Microarray_results (19)
    Expression_cluster (225)
    SAGE_tag: SAGE:tttatattgt Strand: Antisense
      SAGE:tgcattcgattatgccg Strand: Sense
        Unambiguously_mapped
      SAGE:tgcattcgat Strand: Sense
        Unambiguously_mapped
      SAGE:tgatcagtga Strand: Antisense
      SAGE:agcaattggt Strand: Antisense
      SAGE:tagatgattg Strand: Antisense
    Interaction (10)
  Map_info: Positive: Positive_clone: R02D5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 6.42454
  Method: Gene