WormBase Tree Display for Gene: WBGene00010565

WBGene00010565 SMap: S_parent: Sequence: K04G2
  Identity: Version: 2
    Name: CGC_name: vacl-14 Person_evidence: WBPerson3240
      Sequence_name: K04G2.6
      Molecular_name (3)
      Other_name: CELE_K04G2.6 Accession_evidence: NDB BX284601
      Public_name: vacl-14
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 31 Aug 2012 11:56:39 WBPerson2970 Name_change: CGC_name: vacl-14
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vacl
    Allele (28)
    Strain: WBStrain00003373
      WBStrain00036573
    RNASeq_FPKM (74)
    GO_annotation: 00070798
      00070799
      00070800
      00070801
      00117923
      00117924
    Ortholog: WBGene00030059 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00070010 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00151650 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00129536 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00232242 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12243 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7631 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17162 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21009 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4838 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7189 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8289 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7788 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g15765 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g24371 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g5113 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16933 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_02099.g16924 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-vacl-14 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g7801 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold629.g7802 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02851.g28137 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_13196 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000444 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06263 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06264 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g3241 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10062900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1512 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237375 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00095270 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00259643 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285369 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004378 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0038058 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040912-82 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:25507 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2157980 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:631410 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to be involved in phosphatidylinositol biosynthetic process. Predicted to be located in endosome membrane. Predicted to be part of PAS complex. Human ortholog(s) of this gene implicated in striatonigral degeneration. Is an ortholog of human VAC14 (VAC14 component of PIKFYVE complex). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:4751 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:25507)
  Molecular_info: Corresponding_CDS: K04G2.6
    Corresponding_transcript: K04G2.6.1
    Other_sequence (33)
    Associated_feature: WBsf643506
      WBsf656596
      WBsf656597
      WBsf984334
      WBsf1010184
      WBsf218113
  Experimental_info: RNAi_result: WBRNAi00003920 Inferred_automatically: RNAi_primary
      WBRNAi00049939 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram226
      Expr1025063
      Expr1034613
      Expr1153644
      Expr2017955
      Expr2036091
    Drives_construct: WBCnstr00003844
      WBCnstr00031321
    Construct_product: WBCnstr00031321
    Microarray_results (20)
    Expression_cluster (112)
    Interaction (68)
  Map_info: Map: I Position: 2.43324
    Positive: Positive_clone: K04G2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00046969
    WBPaper00055090
    WBPaper00061547
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene