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WormBase Tree Display for Gene: WBGene00010369

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Name Class

WBGene00010369SMapS_parentSequenceH06O01
IdentityVersion2
NameCGC_namechd-1Person_evidenceWBPerson260
Sequence_nameH06O01.2
Molecular_nameH06O01.2
H06O01.2.1
CE32454
Other_nameCELE_H06O01.2Accession_evidenceNDBBX284601
Public_namechd-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classchd
Allele (91)
StrainWBStrain00033287
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00070761Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00032065Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00147996Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00133301Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00142862Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00224892Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10482Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12354Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9777Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13069Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10719Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g114Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15421Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7801Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g2501Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17940Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00180.g6341Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00180.g6342Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-chd-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15449Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00290.g8784Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07592Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14829Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14496Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g14498Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10080910Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1290Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00236892Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00099215Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00261260Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00296929Trichuris murisFrom_analysisWormBase-Compara
WBGene00302135Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000966Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0250786Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-7120Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-050419-256Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:1915Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:1917Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:88393Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2448567Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1306794Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1310056Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
Paralog (19)
Structured_descriptionConcise_descriptionH06O01.2 encodes a large (1,461-aa) putative chromodomain helicaseDNA-binding protein that inhibits DHC-1 in vivo; H06O01.2 is orthologousto budding yeast CHD1, human CHD1 (OMIM:602118), and human CHD2(OMIM:602119); H06O01.2(RNAi) suppresses the lethality of conditional dhc-1 mutations, as well as the spindle length and cytokinesis defectsof dhc-1(or195), indicating that H06O01.2 negatively regulates dynein;H06O01.2 has no obvious function in mass RNAi assays.Paper_evidenceWBPaper00030897
WBPaper00030910
WBPaper00030913
WBPaper00030915
Curator_confirmedWBPerson567
Date_last_updated26 Aug 2007 00:00:00
Automated_descriptionPredicted to enable several functions, including ATP hydrolysis activity; ATP-dependent chromatin remodeler activity; and chromatin binding activity. Predicted to be involved in nucleosome organization and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin. Expressed in several structures, including germ cell and somatic cell. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and developmental and epileptic encephalopathy 94. Is an ortholog of human CHD1 (chromodomain helicase DNA binding protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0080909Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1915)
DOID:10283Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1915)
DOID:0081325Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1917)
Molecular_infoCorresponding_CDSH06O01.2
Corresponding_CDS_historyH06O01.2:wp90
Corresponding_transcriptH06O01.2.1
Other_sequence (84)
Associated_featureWBsf664384
WBsf664385
WBsf664386
WBsf984049
WBsf1010014
WBsf219666
Experimental_infoRNAi_resultWBRNAi00116963Inferred_automaticallyRNAi_primary
WBRNAi00003875Inferred_automaticallyRNAi_primary
WBRNAi00001022Inferred_automaticallyRNAi_primary
WBRNAi00081577Inferred_automaticallyRNAi_primary
WBRNAi00113475Inferred_automaticallyRNAi_primary
WBRNAi00075562Inferred_automaticallyRNAi_primary
WBRNAi00049332Inferred_automaticallyRNAi_primary
WBRNAi00003874Inferred_automaticallyRNAi_primary
WBRNAi00116962Inferred_automaticallyRNAi_primary
Expr_patternExpr16307
Expr16308
Expr1018394
Expr1034528
Expr1153070
Expr2009955
Expr2028195
Drives_constructWBCnstr00031462
Construct_productWBCnstr00031462
Microarray_results (18)
Expression_cluster (109)
Interaction (71)
Map_infoMapIPosition1.63154Error0.008067
PositivePositive_cloneH06O01Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00015650
WBPaper00038491
WBPaper00047313
WBPaper00055090
WBPaper00062707
WBPaper00063052
WBPaper00065308
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene