WormBase Tree Display for Gene: WBGene00010334

WBGene00010334 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 2
    Name: CGC_name: del-5 Person_evidence: WBPerson260
            WBPerson145
      Sequence_name: F59F3.4
      Molecular_name: F59F3.4
        F59F3.4.1
        CE31550
      Other_name: CELE_F59F3.4 Accession_evidence: NDB BX284606
      Public_name: del-5
    DB_info: Database: AceView gene XL622
        WormQTL gene WBGene00010334
        WormFlux gene WBGene00010334
        NDB locus_tag CELE_F59F3.4
        Panther gene CAEEL|WormBase=WBGene00010334|UniProtKB=G5EFH3
          family PTHR11690
        NCBI gene 186631
        RefSeq protein NM_077437.5
        TREEFAM TREEFAM_ID TF320082
        TrEMBL UniProtAcc G5EFH3
        UniProt_GCRP UniProtAcc G5EFH3
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 24 Feb 2012 15:34:46 WBPerson2970 Name_change: CGC_name: del-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: del
    Allele (42)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00037123 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00058370 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00148677 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00134743 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g2536 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4112 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g12181 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14445 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15910 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10080 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1364 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20668 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g19658 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g12070 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00599.g12643 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00599.g12644 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-del-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21939 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00025.g1460 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01211 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023691 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07375 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_X0080400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19989 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (30)
    Structured_description: Automated_description: Predicted to enable ligand-gated sodium channel activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Expressed in intestinal cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info (4)
  Experimental_info: RNAi_result: WBRNAi00016131 Inferred_automatically: RNAi_primary
      WBRNAi00033219 Inferred_automatically: RNAi_primary
      WBRNAi00049215 Inferred_automatically: RNAi_primary
      WBRNAi00015929 Inferred_automatically: RNAi_primary
      WBRNAi00048923 Inferred_automatically: RNAi_primary
      WBRNAi00091095 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr16223
      Expr16225
      Expr1016641
      Expr1152959
      Expr2010851
      Expr2029089
    Drives_construct: WBCnstr00031494
      WBCnstr00042833
      WBCnstr00042835
    Construct_product: WBCnstr00031494
      WBCnstr00042835
    Microarray_results (21)
    Expression_cluster (141)
    Interaction: WBInteraction000450700
      WBInteraction000579065
  Map_info: Map: X Position: 2.8439
    Positive: Positive_clone: F59F3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00064140
    WBPaper00064563
    WBPaper00065080
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene