WormBase Tree Display for Gene: WBGene00009973

WBGene00009973 SMap: S_parent: Sequence: F53C11
  Identity: Version: 2
    Name: CGC_name: decr-1.1 Person_evidence: WBPerson261
            WBPerson21017
          Curator_confirmed: WBPerson555
      Sequence_name: F53C11.3
      Molecular_name: F53C11.3
        F53C11.3.1
        CE10908
      Other_name: CELE_F53C11.3 Accession_evidence: NDB BX284605
      Public_name: decr-1.1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 20 Jan 2023 19:20:32 WBPerson51134 Name_change: CGC_name: decr-1.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: decr
    Allele (32)
    Strain: WBStrain00003032
      WBStrain00037760
    RNASeq_FPKM (74)
    GO_annotation: 00086558
      00086559
      00086560
      00086561
      00086562
      00086563
    Ortholog: WBGene00052877 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032594 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00150402 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00119822 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00126786 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137371 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00112153 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00119183 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g3958 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g6923 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11253 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9998 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4499 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18054 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16762 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9106 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3556 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g21235 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7676 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00426.g10704 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g16352 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14280 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03134.g29178 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_03749 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08596 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13970 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_50167500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g16327 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00216269 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00257101 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00258287 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00262827 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000005146 Saccharomyces cerevisiae From_analysis: Inparanoid
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-040718-142 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:2753 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1914710 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:70999 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00011467 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00012177 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable 2,4-dienoyl-CoA reductase (NADPH) activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in mitochondrion. Is an ortholog of human DECR1 (2,4-dienoyl-CoA reductase 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53C11.3
    Corresponding_transcript: F53C11.3.1
    Other_sequence (52)
    Associated_feature: WBsf647484
      WBsf232826
  Experimental_info: RNAi_result: WBRNAi00065103 Inferred_automatically: RNAi_primary
      WBRNAi00048101 Inferred_automatically: RNAi_primary
      WBRNAi00032682 Inferred_automatically: RNAi_primary
      WBRNAi00102263 Inferred_automatically: RNAi_primary
      WBRNAi00015489 Inferred_automatically: RNAi_primary
    Expr_pattern (9)
    Drives_construct: WBCnstr00003532
      WBCnstr00031774
    Construct_product: WBCnstr00031774
    Microarray_results (20)
    Expression_cluster (195)
    Interaction (78)
  Map_info: Map: V Position: 5.5873
    Positive: Positive_clone: F53C11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028482
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00065140
  Remark: Note that CGC_name decr-1.1 was previously incorrectly associated with F43C11.3 Person_evidence: WBPerson21017
      Curator_confirmed: WBPerson555
        WBPerson51134
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene