WormBase Tree Display for Gene: WBGene00009902

WBGene00009902 SMap: S_parent: Sequence: F49E12
  Identity (6)
  Gene_info: Biotype: SO:0001217
    Gene_class: drd
    Allele (25)
    Strain (2)
    RNASeq_FPKM (74)
    GO_annotation: 00004671
      00004672
      00004673
      00004674
      00117458
      00117459
      00117460
    Ortholog: WBGene00024008 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00053857 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00147490 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00133812 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00106782 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g7689 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10327 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16983 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21850 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16810 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2036 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g4356 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19321 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00076.g3543 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_17730.g25780 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-drd-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8247 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02233.g25550 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08715 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005021 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03383 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20138600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5229 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00208745 Caenorhabditis japonica From_analysis: WormBase-Compara
      SGD:S000003292 Saccharomyces cerevisiae From_analysis: Inparanoid
            OrthoInspector
      FB:FBgn0030485 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0030509 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-2907 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:1334 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:3651124 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1586284 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00009903 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00018036 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable C-4 methylsterol oxidase activity. Predicted to be involved in sterol biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Is an ortholog of human FAXDC2 (fatty acid hydroxylase domain containing 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F49E12.9a
      F49E12.9b
    Corresponding_transcript: F49E12.9c
      F49E12.9a.1
      F49E12.9b.1
    Other_sequence (18)
    Associated_feature: WBsf644461
      WBsf717731
      WBsf988720
      WBsf221736
      WBsf221737
  Experimental_info: RNAi_result: WBRNAi00090585 Inferred_automatically: RNAi_primary
      WBRNAi00032543 Inferred_automatically: RNAi_primary
      WBRNAi00092590 Inferred_automatically: RNAi_primary
      WBRNAi00015324 Inferred_automatically: RNAi_primary
      WBRNAi00047858 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr6126
      Expr1029194
      Expr1151691
      Expr2011084
      Expr2029320
    Drives_construct: WBCnstr00002668
      WBCnstr00031829
    Construct_product: WBCnstr00031829
    Microarray_results (26)
    Expression_cluster (240)
    Interaction (39)
  Map_info: Map: II Position: 0.768222
    Positive: Positive_clone: F49E12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00042257
    WBPaper00044557
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene