WormBase Tree Display for Gene: WBGene00009561

WBGene00009561 SMap: S_parent: Sequence: F39D8
  Identity: Version: 1
    Name: Sequence_name: F39D8.3
      Molecular_name (13)
      Other_name: CELE_F39D8.3 Accession_evidence: NDB BX284606
      Public_name: F39D8.3
    DB_info: Database: AceView gene XQ43
        WormQTL gene WBGene00009561
        WormFlux gene WBGene00009561
        NDB locus_tag CELE_F39D8.3
        Panther gene CAEEL|WormBase=WBGene00009561|UniProtKB=K8ES61
          family PTHR33995
        NCBI gene 181632
        RefSeq protein NM_001277050.1
            NM_001277051.1
            NM_001381170.1
            NM_001373596.3
        TrEMBL UniProtAcc K8ES61
            Q20190
            K8ERP4
            K8FDX8
        UniProt_GCRP UniProtAcc K8ES61
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (71)
    RNASeq_FPKM (74)
    Ortholog: WBGene00146803 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00029661 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00058642 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00125122 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224200 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2461 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12051 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16194 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g20884 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23128 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g13799 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13168 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10810 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9038 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8872 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-F39D8.3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold558.g3833 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00115.g4719 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01780 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_025541 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07029 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g16837 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0134110 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20746 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00240640 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00280704 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00266136 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00004124 Caenorhabditis elegans From_analysis: Panther
      WBGene00009099 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00044582 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00011817 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00219375 Caenorhabditis elegans From_analysis: Panther
      WBGene00022386 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including ADE sheath cell; anterior ganglion (ant); anterior hypodermis; sensory neurons; and somatic gonad precursor based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on tiling array; RNA-seq; and microarray studies. Is affected by fourteen chemicals including 1-methylnicotinamide; methylmercuric chloride; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Cystine-knot cytokine. Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F39D8.3a
      F39D8.3b
      F39D8.3c
      F39D8.3d
    Corresponding_CDS_history: F39D8.3:wp101
    Corresponding_transcript: F39D8.3a.1
      F39D8.3a.2
      F39D8.3b.1
      F39D8.3c.1
      F39D8.3d.1
    Other_sequence (13)
    Associated_feature: WBsf663637
      WBsf663638
      WBsf1008215
      WBsf1008216
      WBsf1008217
      WBsf1024588
      WBsf1024589
  Experimental_info: RNAi_result: WBRNAi00031987 Inferred_automatically: RNAi_primary
      WBRNAi00046771 Inferred_automatically: RNAi_primary
      WBRNAi00014599 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021445
      Expr1034182
      Expr1150645
      Expr2003498
      Expr2021713
    Drives_construct: WBCnstr00032103
    Construct_product: WBCnstr00032103
    Microarray_results (23)
    Expression_cluster (163)
    Interaction (105)
  Map_info: Positive: Positive_clone: F39D8 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X 22.6089
  Reference: WBPaper00064898
  Method: Gene