WormBase Tree Display for Gene: WBGene00009353

WBGene00009353 SMap: S_parent: Sequence: F33A8
  Identity: Version: 2
    Name: CGC_name: sdhd-1 Person_evidence: WBPerson205
      Sequence_name: F33A8.5
      Molecular_name: F33A8.5
        F33A8.5.1
        CE17757
      Other_name: CELE_F33A8.5 Accession_evidence: NDB BX284602
      Public_name: sdhd-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 19 Jul 2006 13:38:53 WBPerson2970 Name_change: CGC_name: sdhd-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sdhd
    Allele (20)
    Strain: WBStrain00002911
      WBStrain00033449
      WBStrain00033443
      WBStrain00033437
      WBStrain00033457
      WBStrain00033460
      WBStrain00033463
      WBStrain00051083
    RNASeq_FPKM (74)
    GO_annotation (22)
    Contained_in_operon: CEOP2512
    Ortholog: WBGene00025932 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00053496 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00139479 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137977 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224044 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6513 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1765 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g8528 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17100 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1139 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9108 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16597 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2468 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19169 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11815 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g3753 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11586 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00208.g7040 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00208.g7041 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-sdhd-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16346 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00037.g2024 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_005424 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02556 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g2608 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20337800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5866 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247819 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00285608 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004154 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
      SGD:S000002585 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            Panther
      SGD:S000005823 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
      FB:FBgn0039112 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040718-192 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040822-17 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10683 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1914175 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:735231 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: F33A8.5 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT D, INTEGRAL MEMBRANE PROTEIN (SDHD; OMIM:602690), which when mutated leads to disease. Curator_confirmed (2)
          Date_last_updated: 06 Aug 2004 00:00:00
      Automated_description: Contributes to succinate dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone and tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; mitochondrial complex II deficiency; and paraganglioma. Is an ortholog of human SDHD (succinate dehydrogenase complex subunit D). Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0060537 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10683)
      DOID:0080533 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10683)
      DOID:0050773 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10683)
  Molecular_info: Corresponding_CDS: F33A8.5
    Corresponding_transcript: F33A8.5.1
    Other_sequence (60)
    Associated_feature: WBsf650542
      WBsf223882
      WBsf223883
  Experimental_info: RNAi_result (16)
    Expr_pattern: Chronogram1799
      Expr5940
      Expr1013665
      Expr1034092
      Expr1150069
      Expr2015665
      Expr2033898
    Drives_construct: WBCnstr00003424
      WBCnstr00032261
    Construct_product: WBCnstr00032261
    Microarray_results (20)
    Expression_cluster (99)
    Interaction (83)
  Map_info: Map: II Position: 3.16067 Error: 0.001283
    Positive: Positive_clone: F33A8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025130
    WBPaper00031194
    WBPaper00038491
    WBPaper00040490
    WBPaper00047026
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene