WormBase Tree Display for Gene: WBGene00008683

WBGene00008683 SMap: S_parent: Sequence: F11A10
  Identity: Version: 2
    Name: CGC_name: repo-1 Person_evidence: WBPerson75
            WBPerson3760
      Sequence_name: F11A10.2
      Molecular_name: F11A10.2
        F11A10.2.1
        CE28910
      Other_name: CELE_F11A10.2 Accession_evidence: NDB BX284604
      Public_name: repo-1
    DB_info: Database: AceView gene 4M849
        WormQTL gene WBGene00008683
        WormFlux gene WBGene00008683
        NDB locus_tag CELE_F11A10.2
        Panther gene CAEEL|WormBase=WBGene00008683|UniProtKB=Q19335
          family PTHR23205
        NCBI gene 178147
        RefSeq protein NM_069889.7
        TREEFAM TREEFAM_ID TF314370
        TrEMBL UniProtAcc Q19335
        UniProt_GCRP UniProtAcc Q19335
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 18 Jun 2010 11:37:34 WBPerson2970 Name_change: CGC_name: repo-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: repo
    Allele (14)
    Strain: WBStrain00001603
      WBStrain00007341
      WBStrain00007395
      WBStrain00034994
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP4488
    Ortholog: WBGene00066308 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028530 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00161491 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00133632 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00157053 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00223556 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g11013 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4778 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g18854 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11014 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7710 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6459 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11045 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g16201 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6492 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17571 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_01141.g15797 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-repo-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold448.g1281 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02370.g26197 Caenorhabditis sinica From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02715 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g180 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g21988 Panagrellus redivivus From_analysis: WormBase-Compara
      chrIV_pilon.g11994 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00239772 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00264442 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00301345 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002201 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0036314 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-897 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10766 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:104912 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1308627 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in spliceosomal complex assembly. Predicted to be located in nucleus. Predicted to be part of U2 snRNP; U2-type prespliceosome; and catalytic step 2 spliceosome. Expressed in head. Is an ortholog of human SF3A2 (splicing factor 3a subunit 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F11A10.2
    Corresponding_CDS_history: F11A10.2:wp60
    Corresponding_transcript: F11A10.2.1
    Other_sequence (61)
    Associated_feature: WBsf978613
      WBsf229246
    Transcription_factor: WBTranscriptionFactor001133
  Experimental_info: RNAi_result (20)
    Expr_pattern: Expr5729
      Expr1014253
      Expr1033780
      Expr1148272
      Expr1200279
      Expr2015298
      Expr2033532
    Drives_construct: WBCnstr00002442
      WBCnstr00032773
    Construct_product: WBCnstr00032773
      WBCnstr00038825
    Microarray_results (18)
    Expression_cluster (105)
    SAGE_tag: SAGE:aaatacggatccttttg Strand: Antisense
      SAGE:aaatacggat Strand: Antisense
      SAGE:cgaaatcaca Strand: Sense
        Unambiguously_mapped
      SAGE:cgaaatcacattggaac Strand: Sense
        Unambiguously_mapped
    Interaction (196)
  Map_info (3)
  Reference: WBPaper00019463
    WBPaper00034662
    WBPaper00036803
    WBPaper00038491
    WBPaper00039463
    WBPaper00048493
    WBPaper00051598
    WBPaper00055090
    WBPaper00064415
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene