WormBase Tree Display for Gene: WBGene00008302
expand all nodes | collapse all nodes | view schema
WBGene00008302 | SMap | S_parent | Sequence | C54D10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pals-38 | Person_evidence | WBPerson260 | |||||
Sequence_name | C54D10.8 | ||||||||
Molecular_name | C54D10.8a | ||||||||
WP:CE45432 | |||||||||
CE45432 | |||||||||
C54D10.8b | |||||||||
WP:CE47766 | |||||||||
CE47766 | |||||||||
C54D10.8a.1 | |||||||||
C54D10.8b.1 | |||||||||
Other_name | CELE_C54D10.8 | Accession_evidence | NDB | BX284605 | |||||
Public_name | pals-38 | ||||||||
DB_info | Database | AceView | gene | 5M922 | |||||
WormQTL | gene | WBGene00008302 | |||||||
WormFlux | gene | WBGene00008302 | |||||||
NDB | locus_tag | CELE_C54D10.8 | |||||||
NCBI | gene | 183785 | |||||||
RefSeq | mRNA | NM_073720.3 | |||||||
NM_001276943.1 | |||||||||
protein | NP_001263872.1 | ||||||||
NP_506121.3 | |||||||||
NM_001276943.3 | |||||||||
NM_073720.5 | |||||||||
UniProt | UniProtAcc | J7RNJ4 | |||||||
Q18826 | |||||||||
TrEMBL | UniProtAcc | J7RNJ4 | |||||||
Q18826 | |||||||||
UniProt_GCRP | UniProtAcc | Q18826 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 26 Oct 2016 09:42:35 | WBPerson2970 | Name_change | CGC_name | pals-38 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pals | ||||||||
Allele (109) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00041843 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | |||||
CSP26.g18880 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g4999 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g18547 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP29.g4392 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP29.g4393 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP32.g1456 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP39.g13542 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP39.g1969 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP39.g22422 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g12255 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
CSP40.g18438 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cnig_chr_V.g18855 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Cnig_chr_V.g21665 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold417.g1120 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00388.g10568 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00843.g16010 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_19920 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
FL83_20853 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_018307 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
GCK72_021696 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g16018 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00065914 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
WBGene00084188 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Paralog | WBGene00044787 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Structured_description | Automated_description | Enriched in body wall muscle cell; intestine; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirteen chemicals including Mercuric Chloride; Psoralens; and allantoin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C54D10.8a | |||||||
C54D10.8b | |||||||||
Corresponding_CDS_history (2) | |||||||||
Corresponding_transcript | C54D10.8a.1 | ||||||||
C54D10.8b.1 | |||||||||
Associated_feature | WBsf234680 | ||||||||
WBsf234681 | |||||||||
Experimental_info | RNAi_result | WBRNAi00012386 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043141 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070078 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030137 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00102072 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1014777 | ||||||||
Expr1147113 | |||||||||
Expr2014709 | |||||||||
Drives_construct | WBCnstr00033070 | ||||||||
Construct_product | WBCnstr00033070 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (207) | |||||||||
Interaction | WBInteraction000151398 | ||||||||
WBInteraction000329309 | |||||||||
WBInteraction000373640 | |||||||||
WBInteraction000431455 | |||||||||
Map_info | Positive | Positive_clone | C54D10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | V | 4.23785 | |||||||
Reference | WBPaper00062345 | ||||||||
Method | Gene |