WormBase Tree Display for Gene: WBGene00007504
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| WBGene00007504 | SMap | S_parent | Sequence | C09H10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nbs-1 | |||||||
| Sequence_name | C09H10.10 | ||||||||
| Molecular_name | C09H10.10a | ||||||||
| C09H10.10a.1 | |||||||||
| CE44319 | |||||||||
| C09H10.10b | |||||||||
| CE43232 | |||||||||
| C09H10.10b.1 | |||||||||
| Other_name | CELE_C09H10.10 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nbs-1 | ||||||||
| DB_info | Database | AceView | gene | 2L386 | |||||
| WormQTL | gene | WBGene00007504 | |||||||
| SignaLink | protein | WBGene00007504 | |||||||
| WormFlux | gene | WBGene00007504 | |||||||
| NDB | locus_tag | CELE_C09H10.10 | |||||||
| NCBI | gene | 174694 | |||||||
| RefSeq | protein | NM_063973.3 | |||||||
| NM_001361876.2 | |||||||||
| TrEMBL | UniProtAcc | Q9U3Q2 | |||||||
| A0A2K5ATP9 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9U3Q2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 07 Jun 2018 14:30:09 | WBPerson1983 | Name_change | CGC_name | nbs-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nbs | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00000297 | ||||||||
| WBStrain00000298 | |||||||||
| WBStrain00051121 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP2717 | ||||||||
| Ortholog | WBGene00151744 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| WBGene00133910 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00053500 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00086991 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| CSP26.g17095 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g1134 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g9103 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g16602 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g2473 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP39.g5837 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g11591 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cnig_chr_II.g5802 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold629.g16339 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00037.g2033 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_18818 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_005419 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| Sp34_20337000 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g5871 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in germ line; germline precursor cell; intestine; and muscle cell based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including let-60; eat-2; and sek-1 based on tiling array; RNA-seq; and microarray studies. Is affected by seven chemicals including rotenone; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SMAD/FHA domain superfamily; FHA domain; and Forkhead-associated (FHA) domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C09H10.10a | |||||||
| C09H10.10b | |||||||||
| Corresponding_CDS_history | C09H10.10:wp196 | ||||||||
| C09H10.10:wp210 | |||||||||
| Corresponding_transcript | C09H10.10a.1 | ||||||||
| C09H10.10b.1 | |||||||||
| Other_sequence | CGC00691_1 | ||||||||
| CJC17395_1 | |||||||||
| CR05853 | |||||||||
| CRC06501_1 | |||||||||
| Associated_feature | WBsf989621 | ||||||||
| WBsf223888 | |||||||||
| Experimental_info | RNAi_result (31) | ||||||||
| Expr_pattern | Expr1020252 | ||||||||
| Expr1033227 | |||||||||
| Expr1144322 | |||||||||
| Expr2000671 | |||||||||
| Expr2018893 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (86) | |||||||||
| Interaction | WBInteraction000556903 | ||||||||
| WBInteraction000556904 | |||||||||
| Map_info | Map | II | Position | 3.20732 | |||||
| Positive | Positive_clone | C09H10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00054279 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
