WormBase Tree Display for Gene: WBGene00007256

WBGene00007256 SMap: S_parent: Sequence: C01H6
  Identity: Version: 3
    Name: CGC_name: swsn-9 Person_evidence: WBPerson260
            WBPerson407
      Sequence_name: C01H6.7
      Molecular_name: C01H6.7a
        C01H6.7a.1
        CE05190
        C01H6.7b
        CE40891
        C01H6.7a.2
        C01H6.7b.1
      Other_name: tag-298
        CELE_C01H6.7 Accession_evidence: NDB BX284601
      Public_name: swsn-9
    DB_info: Database: AceView gene 1H803
        WormQTL gene WBGene00007256
        WormFlux gene WBGene00007256
        NDB locus_tag CELE_C01H6.7
        Panther gene CAEEL|WormBase=WBGene00007256|UniProtKB=Q17581
          family PTHR22881
        NCBI gene 172461
        RefSeq protein NM_001380647.2
            NM_001380648.1
        TREEFAM TREEFAM_ID TF106439
        TrEMBL UniProtAcc A5JYT2
            Q17581
        UniProt_GCRP UniProtAcc Q17581
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:47 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Apr 2005 11:55:18 WBPerson2970 Name_change: CGC_name: tag-298
        3 29 Aug 2012 16:38:19 WBPerson2970 Name_change: CGC_name: swsn-9
                Other_name: tag-298
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: swsn
    Allele (30)
    Strain: WBStrain00036150
    RNASeq_FPKM (74)
    GO_annotation: 00004716
      00004717
      00004718
    Contained_in_operon: CEOP1372
    Ortholog: WBGene00069902 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00040597 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            WormBase-Compara
      WBGene00146567 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00190850 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00150317 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00137082 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00222159 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10289 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11375 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1732 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13050 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10736 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g102 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15438 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7879 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18352 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19200 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00203.g6923 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-swsn-9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_05313.g34769 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_000215 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11988 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11236 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10086000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1338 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237013 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00306053 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263297 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0031947 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-060502-1 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2687 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:14310 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:25818 Homo sapiens From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1349766 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:2145317 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1307359 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1309891 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in muscle cell; pharynx; and somatic gonad. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in acute myeloid leukemia; carcinoma (multiple); and glioblastoma. Is an ortholog of human BRD7 (bromodomain containing 7). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Experimental_model: DOID:1574 Homo sapiens Paper_evidence: WBPaper00046494
          Curator_confirmed: WBPerson324
          Date_last_updated: 20 May 2019 00:00:00
    Potential_model: DOID:3068 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14310)
      DOID:3908 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14310)
      DOID:2152 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14310)
      DOID:3070 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14310)
      DOID:0080199 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14310)
      DOID:3069 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14310)
      DOID:9119 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14310)
  Models_disease_asserted: WBDOannot00000670
  Molecular_info: Corresponding_CDS (2)
    Corresponding_transcript: C01H6.7a.1
      C01H6.7a.2
      C01H6.7b.1
    Other_sequence (20)
    Associated_feature (12)
  Experimental_info: RNAi_result (16)
    Expr_pattern: Expr12274
      Expr1012233
      Expr1033129
      Expr1143490
      Expr2017162
      Expr2035298
    Drives_construct: WBCnstr00020252
      WBCnstr00020253
      WBCnstr00037870
    Construct_product: WBCnstr00020252
      WBCnstr00020253
      WBCnstr00037870
    Regulate_expr_cluster: WBPaper00060764:swsn-9(ok1354)_downregulated
      WBPaper00060764:swsn-9(ok1354)_upregulated
    Microarray_results (23)
    Expression_cluster (168)
    SAGE_tag (14)
    Interaction (91)
  Map_info: Map: I Position: 1.84959 Error: 0.001697
    Positive: Positive_clone: C01H6 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5165
        4477
        4521
    Pseudo_map_position
  Reference (15)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene