WormBase Tree Display for Gene: WBGene00007080

WBGene00007080 SMap: S_parent: Sequence: AH6
  Identity: Version: 2
    Name: CGC_name: sfxn-1.1 Person_evidence: WBPerson1847
      Sequence_name: AH6.2
      Molecular_name: AH6.2
        AH6.2.1
        CE01456
      Other_name: CELE_AH6.2 Accession_evidence: NDB BX284602
      Public_name: sfxn-1.1
    DB_info: Database: AceView gene 2J804
        WormQTL gene WBGene00007080
        WormFlux gene WBGene00007080
        NDB locus_tag CELE_AH6.2
        Panther gene CAEEL|WormBase=WBGene00007080|UniProtKB=Q09201
          family PTHR11153
        NCBI gene 181807
        RefSeq protein NM_063639.4
        SwissProt UniProtAcc Q09201
        TREEFAM TREEFAM_ID TF313205
        UniProt_GCRP UniProtAcc Q09201
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:47 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 21 Jun 2007 14:37:04 WBPerson2970 Name_change: CGC_name: sfxn-1.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sfxn
    Allele (29)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00024178 Caenorhabditis briggsae From_analysis: OMA
      WBGene00155896 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00082304 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00153917 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00126093 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00271608 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CBOVI.g12800 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7085 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4343 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g280 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12647 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g14926 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4381 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g1121 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5757 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00398.g10291 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00738.g13798 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g4224 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_03050.g28898 Caenorhabditis sinica From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09284 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20213700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5513 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00261287 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290699 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0037239 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040801-45 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-070112-2092 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:16087 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:16085 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      MGI:2137677 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      MGI:2137679 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      RGD:620716 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
    Paralog: WBGene00011440 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00044049 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00012402 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00009513 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00008137 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00015777 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable serine transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to be located in mitochondrial inner membrane. Is an ortholog of human SFXN1 (sideroflexin 1) and SFXN3 (sideroflexin 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: AH6.2
    Corresponding_transcript: AH6.2.1
    Other_sequence: SS03026
      PSC02701_2
      GW410700.1
      SSC05542_1
      EX552061.1
      EX563490.1
    Associated_feature: WBsf223659
      WBsf223660
  Experimental_info: RNAi_result: WBRNAi00009530 Inferred_automatically: RNAi_primary
      WBRNAi00038620 Inferred_automatically: RNAi_primary
      WBRNAi00027930 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021442
      Expr1142828
      Expr2015793
      Expr2034026
    Drives_construct: WBCnstr00034016
    Construct_product: WBCnstr00034016
    Microarray_results (16)
    Expression_cluster (123)
    Interaction: WBInteraction000031812
      WBInteraction000347627
  Map_info: Map: II Position: 1.48335 Error: 0.003269
    Positive: Positive_clone: AH6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00062456
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene