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WormBase Tree Display for Gene: WBGene00006534

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Name Class

WBGene00006534SMapS_parentSequenceZK899
IdentityVersion1
NameCGC_nametba-8
Sequence_nameZK899.4
Molecular_name (3)
Other_nameCELE_ZK899.4Accession_evidenceNDBBX284606
Public_nametba-8
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:40WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtba
Allele (53)
RNASeq_FPKM (74)
GO_annotation (18)
OrthologWBGene00026580Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00026818Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00029826Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00033365Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034011Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034751Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00036169Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00039327Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00059745Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00151923Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00129966Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00229959Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3959Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13959Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g139Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20746Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6248Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15334Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7088Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g5445Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g18096Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4764Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00087.g3929Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_X.g22600Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13450Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00011.g760Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_02245Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023301Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03467Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_X0055400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19748Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240941Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00240944Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00291868Trichuris murisFrom_analysisWormBase-Compara
WBGene00294034Trichuris murisFrom_analysisWormBase-Compara
WBGene00294035Trichuris murisFrom_analysisWormBase-Compara
SGD:S000004550Saccharomyces cerevisiaeFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
SGD:S000004593Saccharomyces cerevisiaeFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
Paralog (16)
Structured_descriptionConcise_descriptiontba-8 encodes a member of the alpha tubulin family with high similarity to the human tubulin alpha-6 chain; expressed in some neurons with occasional expression in the hypodermis.Paper_evidenceWBPaper00002319
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to be located in cytoplasm and microtubule. Expressed in germ line; posterior lateral ganglion; retrovesicular ganglion; seam cell; and ventral cord neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK899.4
Corresponding_CDS_historyZK899.4:wp131
Corresponding_transcriptZK899.4.1
Other_sequenceCJC11183_1
EX914457.1
Hbac_isotig06798
MP00928
JI211919.1
CBC15796_1
Dviv_isotig23553
CJC15627_1
HBC27446_1
Associated_featureWBsf237774
Experimental_infoRNAi_resultWBRNAi00081670Inferred_automaticallyRNAi_primary
WBRNAi00038495Inferred_automaticallyRNAi_primary
WBRNAi00022225Inferred_automaticallyRNAi_primary
WBRNAi00059818Inferred_automaticallyRNAi_primary
WBRNAi00076901Inferred_automaticallyRNAi_primary
Expr_pattern (5)
Drives_constructWBCnstr00034319
Construct_productWBCnstr00034319
Microarray_results (18)
Expression_cluster (167)
Interaction (32)
Map_infoMapXPosition1.26204Error0.021917
PositivePositive_cloneZK899Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00042741
WBPaper00045213
WBPaper00049828
WBPaper00055090
WBPaper00056909
WBPaper00059214
RemarkSequence connection from [Gogonea CB, Siddiqui SS]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene