WormBase Tree Display for Gene: WBGene00006489

WBGene00006489 SMap: S_parent: Sequence: ZK856
  Identity: Version: 3
    Name: CGC_name: zhit-3 Person_evidence: WBPerson260
      Sequence_name: ZK856.9
      Molecular_name: ZK856.9
        ZK856.9.1
        CE29017
      Other_name: tag-143 Person_evidence: WBPerson201
        CELE_ZK856.9 Accession_evidence: NDB BX284605
      Public_name: zhit-3
    DB_info: Database: AceView gene 5K692
        WormQTL gene WBGene00006489
        WormFlux gene WBGene00006489
        NDB locus_tag CELE_ZK856.9
        Panther gene CAEEL|WormBase=WBGene00006489|UniProtKB=Q23644
          family PTHR13483
        NCBI gene 179420
        RefSeq protein NM_073226.5
        TREEFAM TREEFAM_ID TF315656
        TrEMBL UniProtAcc Q23644
        UniProt_GCRP UniProtAcc Q23644
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 04 Apr 2005 15:40:22 WBPerson2970 Event: Acquires_merge: WBGene00014110
        3 30 Sep 2011 14:28:20 WBPerson2970 Name_change: CGC_name: zhit-3
                Other_name: tag-143
      Acquires_merge: WBGene00014110
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: zhit
    Allele (33)
    Strain: WBStrain00035544
      WBStrain00034741
    RNASeq_FPKM (74)
    GO_annotation: 00079182
      00079183
      00079184
      00079185
      00079186
      00079187
      00079188
      00079189
    Contained_in_operon: CEOP5248
    Ortholog: WBGene00059079 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00031112 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00149820 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00109796 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00125464 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00227827 Brugia malayi From_analysis: WormBase-Compara
      CSP26.g16404 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4522 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18073 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1036 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10646 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2614 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2416 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16295 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-zhit-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21042 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00100.g4257 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07737 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017592 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08951 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g184 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50283410 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15449 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242759 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263845 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289112 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000001082 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0030406 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-110411-38 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:26089 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1916996 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1308723 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to be involved in box C/D snoRNP assembly; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and snoRNA localization. Located in nucleus. Is an ortholog of human ZNHIT6 (zinc finger HIT-type containing 6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK856.9
    Corresponding_CDS_history: ZK856.9:wp60
    Corresponding_transcript: ZK856.9.1
    Other_sequence (14)
    Associated_feature: WBsf1001073
      WBsf1020277
      WBsf234350
    Transcription_factor: WBTranscriptionFactor000701
  Experimental_info: RNAi_result: WBRNAi00081790 Inferred_automatically: RNAi_primary
      WBRNAi00081828 Inferred_automatically: RNAi_primary
      WBRNAi00059780 Inferred_automatically: RNAi_primary
      WBRNAi00081857 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9511
      Expr1026144
      Expr1032652
      Expr1163209
      Expr1200193
      Expr2018134
      Expr2036271
    Drives_construct: WBCnstr00037896
    Construct_product (2)
    Microarray_results (16)
    Expression_cluster (96)
    Interaction (55)
  Map_info: Map: V Position: 2.36395 Error: 0.00689
    Positive: Positive_clone: ZK856 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5312
        4931
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00027634
    WBPaper00028564
    WBPaper00038444
    WBPaper00038491
    WBPaper00055090
    WBPaper00060613
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene