Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00005648

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00005648SMapS_parentSequenceF20D6
IdentityVersion1
NameCGC_namesrp-7Person_evidenceWBPerson1460
Sequence_nameF20D6.4
Molecular_name (14)
Other_nameCELE_F20D6.4Accession_evidenceNDBBX284605
Public_namesrp-7
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:38WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsrp
Allele (61)
StrainWBStrain00031815
RNASeq_FPKM (74)
GO_annotation (8)
OrthologWBGene00053015Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00032465Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00156505Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00108606Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00099950Pristionchus pacificusFrom_analysisOMA
WBGene00134069Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00193944Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00116915Pristionchus pacificusFrom_analysisInparanoid_8
CBOVI.g35Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1571Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g1572Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g1573Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g17614Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12484Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g19064Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9920Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12942Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7201Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g7202Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g7203Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11645Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3881Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7541Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00608.g12730Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g15936Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15938Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g16570Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g22197Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00004.g243Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00098.g4220Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00553.g12795Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_07703.g38061Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03637Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018773Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_018775Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10062Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_50104100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g14922Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00078986Caenorhabditis remaneiFrom_analysisWormBase-Compara
FB:FBgn0083141Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
FB:FBgn0051902Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
FB:FBgn0031973Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
FB:FBgn0033113Drosophila melanogasterFrom_analysisHieranoid
OrthoInspector
Panther
FB:FBgn0033115Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
FB:FBgn0034195Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
Panther
FB:FBgn0024294Drosophila melanogasterFrom_analysisOMA
OrthoInspector
Panther
FB:FBgn0028983Drosophila melanogasterFrom_analysisHieranoid
OMA
OrthoInspector
Panther
FB:FBgn0265137Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
FB:FBgn0028986Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoInspector
Panther
FB:FBgn0028988Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040721-3Danio rerioFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
ZFIN:ZDB-GENE-030131-264Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
ZFIN:ZDB-GENE-030131-1421Danio rerioFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
ZFIN:ZDB-GENE-030131-7059Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-030131-7169Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
ZFIN:ZDB-GENE-030711-2Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
ZFIN:ZDB-GENE-040426-848Danio rerioFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040718-400Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-040715-5Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-060503-390Danio rerioFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041001-117Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
PhylomeDB
ZFIN:ZDB-GENE-050506-148Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
ZFIN:ZDB-GENE-071004-64Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-070912-60Danio rerioFrom_analysisEnsEMBL-Compara
Panther
SonicParanoid
HGNC:775Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:3311Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
SonicParanoid
HGNC:8584Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
SonicParanoid
HGNC:8950Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
SonicParanoid
HGNC:8952Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:8955Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:10569Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:10570Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
HGNC:13902Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
SonicParanoid
HGNC:14220Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
HGNC:14221Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:88095Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
Panther
PhylomeDB
SonicParanoid
MGI:97609Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
MGI:3573933Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
MGI:894668Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:894669Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:894688Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
PhylomeDB
SonicParanoid
MGI:894671Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:894672Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:1194506Mus musculusFrom_analysisEnsEMBL-Compara
OMA
Panther
PhylomeDB
SonicParanoid
MGI:98377Mus musculusFrom_analysisEnsEMBL-Compara
OMA
Panther
MGI:103123Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
PhylomeDB
SonicParanoid
MGI:106603Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:109579Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
SonicParanoid
MGI:894657Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
MGI:894667Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
MGI:1913472Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
PhylomeDB
SonicParanoid
MGI:1914207Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:1915181Mus musculusFrom_analysisEnsEMBL-Compara
OMA
Panther
PhylomeDB
SonicParanoid
MGI:1919119Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
MGI:1919260Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:2145481Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:2151053Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:2667783Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:3042250Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
SonicParanoid
MGI:2138648Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
SonicParanoid
MGI:107817Mus musculusFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
MGI:2445361Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
SonicParanoid
MGI:2445363Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
PhylomeDB
SonicParanoid
MGI:1277952Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:2683293Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:2683295Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:2667778Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
MGI:3709608Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
PhylomeDB
SonicParanoid
RGD:3326Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
SonicParanoid
RGD:2972Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
SonicParanoid
RGD:3747Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
SonicParanoid
RGD:621823Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
SonicParanoid
RGD:619817Rattus norvegicusFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
RGD:619896Rattus norvegicusFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:69342Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
SonicParanoid
RGD:71063Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
RGD:619897Rattus norvegicusFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:628853Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
SonicParanoid
RGD:1309833Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
RGD:735108Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1306203Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
RGD:735068Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
SonicParanoid
RGD:3745Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
PhylomeDB
SonicParanoid
RGD:1549766Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
RGD:1306497Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1304661Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
SonicParanoid
RGD:1566382Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
RGD:1307404Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1308725Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
RGD:1560658Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
SonicParanoid
RGD:1562844Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1549730Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1310452Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1562868Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
RGD:6502633Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
SonicParanoid
ParalogWBGene00005642Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00005643Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00005644Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00005647Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00005649Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00005650Caenorhabditis elegansFrom_analysismodENCODE_Pseudogenes
Structured_descriptionAutomated_descriptionPredicted to enable peptidase activity and serine-type endopeptidase inhibitor activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in extracellular space. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; autosomal recessive nonsyndromic deafness 91; and thrombophilia (multiple). Is an ortholog of several human genes including SERPINB1 (serpin family B member 1); SERPINB8 (serpin family B member 8); and SERPINC1 (serpin family C member 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (13)
Molecular_infoCorresponding_CDSF20D6.4a
F20D6.4b
F20D6.4c
F20D6.4d
Corresponding_CDS_historyF20D6.4:wp127
Corresponding_transcriptF20D6.4a.1
F20D6.4a.2
F20D6.4b.1
F20D6.4b.2
F20D6.4c.1
F20D6.4d.1
Other_sequence (32)
Associated_featureWBsf646989
WBsf646990
WBsf661472
WBsf232071
WBsf232072
Experimental_infoRNAi_resultWBRNAi00031178Inferred_automaticallyRNAi_primary
WBRNAi00045113Inferred_automaticallyRNAi_primary
WBRNAi00089046Inferred_automaticallyRNAi_primary
Expr_patternExpr1026188
Expr1032523
Expr1149064
Expr2016606
Expr2034797
Drives_constructWBCnstr00034820
Construct_productWBCnstr00034820
Microarray_results (32)
Expression_cluster (108)
Interaction (33)
Map_infoMapVPosition1.12322Error0.018855
PositivePositive_cloneF20D6Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4960
4702
4712
Pseudo_map_position
ReferenceWBPaper00005432
WBPaper00006476
WBPaper00010247
WBPaper00026792
WBPaper00026830
WBPaper00038491
WBPaper00055090
Remarkspn-1 has been mistakenly referred to as srp-7 [021127 ck1]Paper_evidenceWBPaper00005351
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene