WormBase Tree Display for Gene: WBGene00004987
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WBGene00004987 | SMap | S_parent | Sequence | T08A9 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | spp | |||||
Allele (22) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00084450 | |||||
Ortholog | WBGene00051353 | Caenorhabditis remanei | From_analysis | OMA | ||
TreeFam | ||||||
Inparanoid_8 | ||||||
WBGene00032226 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||
OMA | ||||||
WBGene00149475 | Caenorhabditis brenneri | From_analysis | OMA | |||
TreeFam | ||||||
Inparanoid_8 | ||||||
WBGene00112508 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||
CSP31.g20571 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | |||
CSP32.g1682 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | |||
CSP38.g14644 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | |||
CSP38.g14645 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | |||
CSP38.g14646 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | |||
CSP38.g14648 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | |||
CSP38.g14649 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | |||
Cang_2012_03_13_00237.g7617 | Caenorhabditis angaria | From_analysis | WormBase-Compara | |||
Sp34_X0202600 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | |||
chrX_pilon.g19382 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00290299 | Trichuris muris | From_analysis | WormBase-Compara | |||
Paralog (12) | ||||||
Structured_description | Concise_description | spp-2 encodes an antimicrobial peptide that belongs to the SPP-protein family, called caenopores, with structural similarity to saposin-like proteins (SAPLIPs), the amoebapores and the mammalian NK-lysin and granulysin; caenopores are part of the worm's innate immune system and interact with and eliminate bacteria via membrane pore-forming activity; C. elegans has at least 33 putative SPP proteins; phylogenetic analysis indicates that spp-2 is most similar to spp-4, spp-5 and spp-6. | Paper_evidence | WBPaper00035289 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson1823 | ||||||
WBPerson567 | ||||||
Date_last_updated | 17 Sep 2013 00:00:00 | |||||
Automated_description | Involved in defense response to Gram-positive bacterium. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | T08A9.12 | ||||
Corresponding_transcript | T08A9.12.1 | |||||
Other_sequence | Tcir_isotig10802 | |||||
FD515466.1 | ||||||
CSC00512_1 | ||||||
FD515127.1 | ||||||
CBC06526_1 | ||||||
MH05494 | ||||||
FD516413.1 | ||||||
FD516016.1 | ||||||
CBC06526_2 | ||||||
Associated_feature | WBsf237568 | |||||
WBsf237569 | ||||||
Experimental_info | RNAi_result | WBRNAi00052823 | Inferred_automatically | RNAi_primary | ||
Expr_pattern | Expr1016870 | |||||
Expr1156423 | ||||||
Expr2016080 | ||||||
Expr2034316 | ||||||
Drives_construct | WBCnstr00035290 | |||||
Construct_product | WBCnstr00035290 | |||||
Microarray_results (16) | ||||||
Expression_cluster (318) | ||||||
Map_info | Map | X | Position | -1.77469 | ||
Positive | Positive_clone | T08A9 | Inferred_automatically | From CDS info | ||
From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||
Reference | WBPaper00006437 | |||||
WBPaper00024209 | ||||||
WBPaper00044985 | ||||||
WBPaper00058665 | ||||||
WBPaper00065988 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |