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WormBase Tree Display for Gene: WBGene00004826

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Name Class

WBGene00004826EvidenceCGC_data_submission
SMapS_parentSequenceR12H7
IdentityVersion1
NameCGC_nameskr-20Person_evidenceWBPerson322
Sequence_nameR12H7.5
Molecular_nameR12H7.5
R12H7.5.1
CE06317
Other_nameCELE_R12H7.5Accession_evidenceNDBBX284606
Public_nameskr-20
DB_infoDatabaseAceViewgeneXN840
WormQTLgeneWBGene00004826
WormFluxgeneWBGene00004826
NDBlocus_tagCELE_R12H7.5
PanthergeneCAEEL|WormBase=WBGene00004826|UniProtKB=G5EE98
familyPTHR11165
NCBIgene181445
RefSeqproteinNM_077791.6
TREEFAMTREEFAM_IDTF300142
TrEMBLUniProtAccG5EE98
UniProt_GCRPUniProtAccG5EE98
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskr
Allele (13)
RNASeq_FPKM (74)
GO_annotation00015684
00015685
00015686
00015687
00015688
00015689
00015690
00113232
Contained_in_operonCEOPX116
OrthologWBGene00058757Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00027754Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00146301Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00226870Brugia malayiFrom_analysisWormBase-Compara
CSP26.g1036Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14144Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g23024Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g12473Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6711Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11097Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g11098Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g11100Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g14204Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g14591Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g14592Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18199Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18201Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18202Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18203Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18204Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18205Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18206Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18529Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18534Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19938Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19944Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19946Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4238Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4239Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4240Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4242Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4243Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4244Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4245Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4246Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4247Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4248Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4249Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4250Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4252Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4253Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4258Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4260Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4261Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5420Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5421Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g569Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g7009Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g15595Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6983Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-skr-20Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10117Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00196.g6778Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01922Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_025401Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11277Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21634Panagrellus redivivusFrom_analysisWormBase-Compara
chrX_pilon.g20365Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246295Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00093042Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00108604Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00118654Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00118655Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275787Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00258939Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285691Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002736Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
FB:FBgn0025637Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026174Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026175Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0031074Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026176Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0034863Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-040426-1707Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
HGNC:10899Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
MGI:103575Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
RGD:1359648Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
Paralog (20)
Structured_descriptionConcise_descriptionThe skr-20 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-20(RNAi) animals are at least superficially normal.Paper_evidenceWBPaper00005128
WBPaper00005129
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human SKP1 (S-phase kinase associated protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR12H7.5
Corresponding_transcriptR12H7.5.1
Other_sequenceAF440519
CBC00224_1
Associated_featureWBsf671189
WBsf238106
Experimental_infoRNAi_resultWBRNAi00086808Inferred_automaticallyRNAi_primary
WBRNAi00034902Inferred_automaticallyRNAi_primary
WBRNAi00051867Inferred_automaticallyRNAi_primary
WBRNAi00086799Inferred_automaticallyRNAi_primary
WBRNAi00098058Inferred_automaticallyRNAi_primary
WBRNAi00017802Inferred_automaticallyRNAi_primary
WBRNAi00094813Inferred_automaticallyRNAi_primary
WBRNAi00086807Inferred_automaticallyRNAi_primary
WBRNAi00098133Inferred_automaticallyRNAi_primary
Expr_pattern (5)
Drives_constructWBCnstr00035360
Construct_productWBCnstr00035360
Microarray_results (18)
Expression_cluster (130)
Interaction (13)
Map_infoMapXPosition10.3998
PositivePositive_cloneR12H7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00029151
WBPaper00029221
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene