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WormBase Tree Display for Gene: WBGene00004822

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Name Class

WBGene00004822EvidenceCGC_data_submission
SMapS_parentSequenceC42D4
IdentityVersion1
NameCGC_nameskr-16Person_evidenceWBPerson322
Sequence_nameC42D4.6
Molecular_nameC42D4.6
C42D4.6.1
CE37712
Other_nameCELE_C42D4.6Accession_evidenceNDBBX284604
Public_nameskr-16
DB_infoDatabaseAceViewgene4H931
WormQTLgeneWBGene00004822
WormFluxgeneWBGene00004822
NDBlocus_tagCELE_C42D4.6
PanthergeneCAEEL|WormBase=WBGene00004822|UniProtKB=Q18567
familyPTHR11165
NCBIgene191765
RefSeqproteinNM_068727.7
TREEFAMTREEFAM_IDTF300142
TrEMBLUniProtAccQ18567
UniProt_GCRPUniProtAccQ18567
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskr
Allele (11)
RNASeq_FPKM (74)
GO_annotation00061674
00061675
00061676
00061677
00061678
00113228
OrthologWBGene00028175Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00072488Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00162409Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00157994Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00226870Brugia malayiFrom_analysisWormBase-Compara
CSP26.g15466Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20315Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g21354Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g6338Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16553Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11097Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g11098Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g11100Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g14204Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g14591Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g14592Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18199Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18201Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18202Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18203Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18204Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18205Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18206Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18529Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g18534Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19938Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19944Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19946Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4238Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4239Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4240Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4242Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4243Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4244Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4245Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4246Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4247Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4248Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4249Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4250Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4252Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4253Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4258Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4260Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4261Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5420Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5421Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g569Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g7009Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17585Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18729Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-skr-16Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g21113Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01049.g17942Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06542Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013866Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g21634Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40291400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g10775Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246295Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00099638Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00277920Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00258939Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285691Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002736Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0025637Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026174Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026175Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0031074Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0026176Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0034863Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-040426-1707Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
HGNC:10899Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
MGI:103575Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
RGD:1359648Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
Paralog (20)
Structured_descriptionConcise_descriptionThe skr-16 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-16(RNAi) animals are at least superficially normal.Paper_evidenceWBPaper00005128
WBPaper00005129
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human SKP1 (S-phase kinase associated protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_info (5)
Experimental_infoRNAi_resultWBRNAi00086795Inferred_automaticallyRNAi_primary
WBRNAi00042358Inferred_automaticallyRNAi_primary
WBRNAi00069094Inferred_automaticallyRNAi_primary
WBRNAi00094690Inferred_automaticallyRNAi_primary
Expr_patternExpr1018259
Expr1032397
Expr1146345
Expr2015843
Expr2034076
Drives_constructWBCnstr00035362
Construct_productWBCnstr00035362
Microarray_results (17)
Expression_cluster (103)
Interaction (20)
Map_infoMapIVPosition3.29126Error5.7e-05
PositivePositive_cloneC42D4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene